Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01411 ATGAATGATTCCACCAACGGTAGCGTCAGGAAGAGGACCAGAGCGGATGAAGCCGATGAAGACGACGATTCAATGGGAAAAAATGGTGGAGGTAAGAGTTTGAAAGGATTGGTTACTTCTCTGTTGCTGTTGGATGAACAGGACAAGTGTCAGCAGGAAGAACATGACAGAGTTTCCATGGAGGCGAAGATTTCGATGGAGGTGAATCACAGGAAGAAGACGAAAGCTATGGTCGATTTCTACTCCGAAGTTCAAGATTACTATTCTGAAGTCGAGGAATCAGACCGAATGAAACGGAAAAAATCGCGATTAGCAGCTAACTCTGTTGCGGTTGCGGCCGCTTCCGATGGATTACAGAAGATCGAAATCGAAAAATCAAACAAACGCGGCGGCGATGGCGGTGGTGGTGGTAGCGGTCATCACCGGAGACTCTGGGTGAAAGATAGGTCAAAAGCCTGGTGGGATGAATGTAACAGTCCCGATTATCCCGATGAAGAATTCAAGAAGCAATTCAGAATGGGTAGGGCAACTTTCGATATGATTTGTGAAGAACTTAATTCCGCGATAGCTAAAGAAGACACAACTCTTCGAACCGCCATTCCCGTCCAGCAAAGGGTCGCTGTTTGCTTATGGAGATTAGCCACCGGCGATCCTCTTCGAGTCGTATCCAAGAAATTCGGATTAGGTATTTCAACTTGCCATAAACTAGTTCTCGAGGTCTGCACCGCCATTAGAACAGTACTAATGCCGAAGCATCTCCAATGGCCAGAAGAAGAAACGCTCAGAAGAATCAAAGAGGAATACGAATCAATTTCCGGAATCCCTAACGTCGTCGGTTCAATGTACACCACACACATTCCGATCATCGCCCCTAAAATCAGCGTAGCAGCTTATTTCAACAAGCGTCACACAGAGAGAAATCAAAAAACATCATACTCAATTACAGTTCAAGGAGTCGTGGATCCAAGAGGAGTCTTCACCGACGTTTGCATCGGTTGGCCGGGATCAATGCCGGACGATCAAGTTCTAGAGAAATCGGCTCTGTTTCAAAGGGCAAATGGAGGATTATTGAAAGGGGTTTGGATTGTTGGGGGATCCAGTTACCCATTATTGGACTGGGTTTTAGTACCTTACACACAGCAACATTTAACCTGGACACAACATGCTTTCAATGAGAAGATTGGGGAGATTCAGAAGGTGGCTAAAGATGCATTTGCACGGCTGAAAGGACGGTGGCGCTGCTTGCAGAAGCGGACGGAGGTGAAGCTTCAAGACTTGCCGGTGGTGCTTGGAGCTTGCTGTGTTCTTCACAATATTTGTGAATTGGGGAATGAAGAAATGGATACAGAACTCTTAACAGAGCTTCAAGATGATGAAATGGCGCCTGAAATTGCTTTGAGGTCAGTGCCTTCCATGAAAGCCAGAGATGCCATTGCTCATAATCTGCTGCACCATGGCCTTGCTGGGACTTCTTTTCTTTAA 1482 46.22 MNDSTNGSVRKRTRADEADEDDDSMGKNGGGKSLKGLVTSLLLLDEQDKCQQEEHDRVSMEAKISMEVNHRKKTKAMVDFYSEVQDYYSEVEESDRMKRKKSRLAANSVAVAAASDGLQKIEIEKSNKRGGDGGGGGSGHHRRLWVKDRSKAWWDECNSPDYPDEEFKKQFRMGRATFDMICEELNSAIAKEDTTLRTAIPVQQRVAVCLWRLATGDPLRVVSKKFGLGISTCHKLVLEVCTAIRTVLMPKHLQWPEEETLRRIKEEYESISGIPNVVGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPRGVFTDVCIGWPGSMPDDQVLEKSALFQRANGGLLKGVWIVGGSSYPLLDWVLVPYTQQHLTWTQHAFNEKIGEIQKVAKDAFARLKGRWRCLQKRTEVKLQDLPVVLGACCVLHNICELGNEEMDTELLTELQDDEMAPEIALRSVPSMKARDAIAHNLLHHGLAGTSFL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21872546 21874027 - Lsi04G014110.1 Lsi04g01411 661460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01411 493 Pfam DDE superfamily endonuclease 282 438 IPR027806 -
Lsi04g01411 493 PANTHER UNCHARACTERIZED 11 492 IPR045249 -
Lsi04g01411 493 MobiDBLite consensus disorder prediction 122 142 - -
Lsi04g01411 493 MobiDBLite consensus disorder prediction 1 33 - -
Lsi04g01411 493 PANTHER NUCLEASE 11 492 - -
Lsi04g01411 493 MobiDBLite consensus disorder prediction 9 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01411 - - - bhj:120087340 935.636
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01411 Lsi-Chr4:21872546 Lsi10g00306 Lsi-Chr10:4931295 1.03E-24 dispersed
Lsi02g01392 Lsi-Chr2:19132480 Lsi04g01411 Lsi-Chr4:21872546 3.12E-36 transposed
Lsi02g02262 Lsi-Chr2:29188835 Lsi04g01411 Lsi-Chr4:21872546 8.49E-42 transposed
Lsi04g00870 Lsi-Chr4:8491092 Lsi04g01411 Lsi-Chr4:21872546 5.34E-37 transposed
Lsi04g01411 Lsi-Chr4:21872546 Lsi06g00298 Lsi-Chr6:3425331 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g114 Blo01g01511 . . . . . . . . . Cma01g01722 . Car09g00299 . . . . . . . . . . . Cla05g01848 Cam05g1972 Cec05g1985 Cco05g2044 Clacu05g1965 Cmu05g1846 Cre05g1970 Cone4ag1676 Cone7ag1276 Cone17ag0936 Cone20ag0279 Lsi04g01411 . . . . . . . . . . . Sed13g1880 Cmo01g01791 Cmo09g00351 Cma09g00351 . Car01g01336 . . Cpe02g00274 Bhi09g03130 Tan01g4604 Cmetu07g1835 . Hepe01g1899 Mch11g0431 . . . . . . . . . . . Cme07g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001890 0 2 1 0 0 2 4 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 3 2 2 3 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01411 Lsi_Chr04 FPKM 30.494776 34.685856 21.801649 23.216969 6.780702 6.360464 7.461584 0.0 0.223171 0.0