Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01412 ATGTCGACAGTTTACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTGTGGACCGCTCGATATCGAGCTCTGGCCTAAGGAGGCTCCCAAAGCTGTCAGAAATTTCGTTCAGCTCTGTCTTGAAGGCTACTACGACAACACCATCTTTCACCGGATTATCAAGGACTTCATTGTTCAGGGCGGCGATCCTACCGGTAGCGGCACAGGTGGTGAAAGTATATATGGGGGTGTTTTTCCGGATGAGTTTCACTCACGGCTTAGATTCAAGCACAGGGGCTTAGTAGCATGTGCAAATGCTGGGTCGCCTCATTCTAATGGAAGTCAATTTTTTATAACCTTGAGTCGATGTGATGACCTTGACAAGAAGCACACAATTTTTGGAAAGGTCACTGGGGATTCTATATATAACCTAACAAGTTTGGGTGAGTTTGAAACTGACAAGGATGATCGTCCTGTGGATCCACCCAAGATAAAATCAATTGAGGTATTATGGAATCCATTTGATGATATTGTTCCAAGAGCACCTGCTAAGCCTGTGGCCACATCCACTGTTGATTCTGAAAACAAGGACACTAAGAAGAAAGCTGTGAAAAAACTAAATTTACTATCGTTTGGAGAAGAAGCTGAAGAGGACGAGAAAGAACTGGCAGCTGTGAAGAAAAAAATTCGGAGCAGTCATGATGTGTTGGATGATCCACGTCTGCTAAAGGCAGAGATTCCAAGCAGTGAATTGGATTCGTCTGACAGTAAAAGAACGAGGGAGATGCAGCTATCTGTTAGAGAGACTTTAGCATCAAAGAAACAAGAGTCTCGTAAAGATTCAGATGCTGAAAATTCTAATCTCCCTCAATATAGTGAGAGTGATGATGATGAAGCTAACTTCGATGCCCGAATGCGTCAACAGATATTGAGAAAAAGAACAGAATTGGGTGATGCACCATCTCACCACAAGTCTAAAAATGGGACTTCTCACTCAAAGAATAATGAAGGATCTAGTCGAAGGCCCAGTGCTGAAAACACTAAACGTGAGCAACCAAAGATTGAGAAGTTATCTTTGAAGAAAAAAGGAATTGGATCTGAAGCAAGAGCGGAGCGAATGGCTAATGCTGACTCAGACTTGCAATTATTGGGTGATGCCGAAAGAGGAAGACAGCTGCAAAAATTGAAGAAGAGAAGACTTCAAGGACGTGAAGATGAGGTTTTGGCAAAACTTGCGAATTTTAAGAAAGGCTTTTCTGGAAAACCAGAACCTTCAAACGCTGAATCTGGGGGTGGCAATGATGATTTGTCAGACTGGAAATCTGTTAGGTTAAAATTCACACCAGAGCCTGGCAAGGACCGCATGTCACGTAGTGATGATCCAAACGACTACGTTGTGCATGACCCTCTTCTCGAGAAGGGGAAAGAGAAATTTAACAAAATGCAAGCCAAACAAAAACGACGTGAACGGGAATGGGCTGGAAAGTCTCTTACTTGA 1491 43.46 MSTVYVLEPPTRGKVVLNTTCGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFIVQGGDPTGSGTGGESIYGGVFPDEFHSRLRFKHRGLVACANAGSPHSNGSQFFITLSRCDDLDKKHTIFGKVTGDSIYNLTSLGEFETDKDDRPVDPPKIKSIEVLWNPFDDIVPRAPAKPVATSTVDSENKDTKKKAVKKLNLLSFGEEAEEDEKELAAVKKKIRSSHDVLDDPRLLKAEIPSSELDSSDSKRTREMQLSVRETLASKKQESRKDSDAENSNLPQYSESDDDEANFDARMRQQILRKRTELGDAPSHHKSKNGTSHSKNNEGSSRRPSAENTKREQPKIEKLSLKKKGIGSEARAERMANADSDLQLLGDAERGRQLQKLKKRRLQGREDEVLAKLANFKKGFSGKPEPSNAESGGGNDDLSDWKSVRLKFTPEPGKDRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGKSLT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21886571 21893260 - Lsi04G014120.1 Lsi04g01412 661461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01412 496 MobiDBLite consensus disorder prediction 244 262 - -
Lsi04g01412 496 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Lsi04g01412 496 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 208 IPR044666 -
Lsi04g01412 496 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 208 - -
Lsi04g01412 496 MobiDBLite consensus disorder prediction 340 372 - -
Lsi04g01412 496 SUPERFAMILY Cyclophilin-like 14 179 IPR029000 -
Lsi04g01412 496 MobiDBLite consensus disorder prediction 295 323 - -
Lsi04g01412 496 MobiDBLite consensus disorder prediction 436 496 - -
Lsi04g01412 496 Gene3D - 2 181 IPR029000 -
Lsi04g01412 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Lsi04g01412 496 MobiDBLite consensus disorder prediction 244 496 - -
Lsi04g01412 496 CDD cyclophilin_CeCYP16-like 8 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01412 K12737 SDCCAG10; peptidyl-prolyl cis-trans isomerase SDCCAG10 [EC:5.2.1.8] - csv:101211505 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01872 Lsi-Chr3:30129789 Lsi04g01412 Lsi-Chr4:21886571 6.04E-47 dispersed
Lsi04g01412 Lsi-Chr4:21886571 Lsi04g00730 Lsi-Chr4:6731941 9.70E-25 dispersed
Lsi04g01412 Lsi-Chr4:21886571 Lsi11g01025 Lsi-Chr11:17432350 1.82E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g113 Blo01g01459 . Bda01g00628 . . Bpe02g00496 . Bma01g02208 . . Cma01g01723 . . . . . . . . . . . . . Cla05g01847 Cam05g1971 Cec05g1984 Cco05g2043 Clacu05g1964 Cmu05g1845 Cre05g1969 Cone4ag1675 Cone7ag1278 . . Lsi04g01412 . . . . . . . . . . . . Cmo01g01789 . . . Car01g01337 . . Cpe02g00272 Bhi09g03131 . . . Hepe01g1898 Mch11g0430 . . . . . . . . . . . Cme07g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010515 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01412 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0