Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01414 ATGGAAACCGAGAATGCAGATGAGCTCGCATCGTCGACGGCTTCCACTCTCCTTCCACTCGCTTCCGCCGCGCAGCAGCCATACGTGTCGGAGCTCCTTTCTTTTACCCTCGATCGTCTAAACAAGGAACCGGAGCTTCTTCAGGTGGATGCGGAGCGAATTCGGAGGCAAATACAAGAGGTGGCAGTGGGCAACTACCAAGCTTTCATTGCCGCTGCCGATGCGTTGCTTGCAATTCGAGAAGAAGTATCTTCCATTGACAAGCATCTTGAATCTCTGATATCTGAGATTCCAAATTTGACATCGGGTTGCACAGAGTTTGTTGAATCTGCGGAACAGATTCTGGAGAAGAGGAAGATGAACCAGATATTGTTAACACATCACAGTACTCTGCTTGATTTACTTGAAATTCCTCAGCTTATGGACACGTGTATAAGAAATGGAAATTACGATGAAGCTCTTGACTTGGAAGCATTTGTTGCAAAACTTTCAACCATGCACCCTAAAATACCAGTTATTCAAGCACTAGTGGCAGAAGTCAGGCGAACCACCCAATCTCTTCTTTCTCAACTTCTCCAAAAACTTCGATCAAATATTCAGTTACCTGAATGTCTCCGGATCATTGGATATCTACGTCGAATTGGAGTGTTTAGTGAATATGAAATGCGTTTACAGTTTTTAAGATGCCGAGAGGCATGGCTTACTGGAATTCTCGAAGATCTTGACCAGAGAAATGCTTATGAATATTTGAAAGGAATGATCAATTGTCACAGGACACATCTCTTTGACGTTGTTAACCAATATCGAGCTATATTTGCTGATGATACATCCGGAAGTGAAGAAAATTATGACAGTGGGCTTCTTTTTAGTTGGTCTATGCATCAGATAACTTCTCATCTGAAGACGCTCAAAATAATGCTCCCAAAAATAACAGAAGGTGGATCTCTATCAAATATATTGGAACAGTGCATGTACTGTGCTATGGGGCTTGGCTGGGTTGGAATGGATTTTCGTGGTTTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTCAATTTATTTTCAAAAAATATGGGTACTGCAGTTGATAATTTTCAGTTAGTTCTGGATTCCCATCGATGGGTCCCACTACCAGCTGTTGGCTTTCCGTCAAGTACTATTGGTGAGGAAAGTCAGGAAGACGTGACTCCACCTTCGTATTTGATGGAACATCCACCTCTTGCTGTTTTTGTGAATGGTGTATCGGCAGCTATGAACGAACTTCGCCATTGTGCCCCTTTGAGTTTGAAACATGTAATAGCTCAGGAATTAATAAAAGGATTGCAGGCTGTTTCTGACTCTTTATTGAGATACAACACAACTCGCATGCTAAAAGATAATGAATCTGGACTTTTCCTCCAGCTTTGCCGGGCATTCATAGAGGTTGCTTATCCACATTGTGCCACTTGTTTTGGCCGCTGTTATCCTGGCGGGGCGACACTTATATTGGACGCAAAGAATTTATACGATGGCATTGGTCGCTTACTGACCGTCTCTTCCTCTAGAGAACTCCCAAAAACAGTCAGTAACGCCGAAGAGAAAAACGTTACAGAAAACGGCGATATGCCTGCACTGGAAAATGGAGCTACATCAGATGCTGATAAGGACCAGAAAAGCCCCTCCTTGCACATTATAACTGGAACAGGTGTCTCAAGATTCCATGAAAGTTATTCTGAGAGGAATTATGCTTTGAGTTTTGAGGGAGAGAGTATGGCTTTGAATGGAGAACAAACTATGGAGCAACAGACAGCAACTCAGAAGATTCAGATATACTCTACCTCTAGTACTGGAGTTTCTCCTTTCTGGAGAGAGAAGTATGAAAAGGATGCTAAGAAGTACTGGGATATCTTTTATAAAAAGCATCAAGATCGATTTTTCAAGGACCGACACTACCTGGACAAAGAATGGGGCCAATACTTTTTTGCAGAAGAAAGAAAAGTTGTTTTGGAGGTAAGTGATGTTGTTTCAGTTGGCTGTGGAGCAGGAAACACTGTTTTTCCTTTGATTGCTACATACCCAAATGTTTTCATTCATGCATGTGATTTCTCACCACGAGCAGTGAACTTAGTCAAGACACACAAAGACTTCAATGAGAGCCGTGTTGCTGCATTTGTTAGTGATCTTACTGCTGATGACGTGAGCAACCACATTTCTCCATCATCGATTGATGTAGTAATGATGCCAACTGGATGTGTTCTGTTTCGTGACTATGCAACTGGTGACCTTGCTCAGGAACGATTTGATTGCAAAGATCAAAAAATCAGTGAGAACTTTTACGTCCGAGGAGATGGAACTCGTGCTTTCTACTTTTCTAATGAGTTTCTTACGAGTACGTTTGAAGAAAATGGATTTGATGTTAAAGAACTTGATGTATGCTGCAAACAAGTCGAGAACCGATCGAGGGATTTGATCATGAATAGGTTCAATGTGCTATTCAAACTAGTTTTAAGAGTGATCTTGGGCCCATTTGCCCTACCTCTTAGAATTGCAATGTTTAAATTCAAACTCATTATCGTGATTGTCTTAACCACTCTCAATGTCAATAATATGGTGCATGTGTGGCGATGGGTCCAAGCTGTATTCAGCCTTTCAGAGTTTGCAACTCCAGAAGCTAAACTTAGGGCAGGTTTTCCCGGTCAAGTTAAAACCGAGCCTAGGCCCAAGGAGAACCGTTCAGACGGGCCTGTCAATGATTTTGAACTTGACTTCTCTGAGGGTGTTGCAGTCGATATGTTTGGAATTCCACCTTCTCAGGATAATGAGATTGTTGAGGTGGATGTTAGAGGATGGAATTTCAAAATTAAAGTGCTCTCGAGAGAGTTTCAACATACCTGCAAATCCACTGGTTTGATGCTGTGGGAATCTGCTCGTTTGATGGCCTCTGTCCTCGCAGAAAATCCAGCTATTTGTGCTGGAAAGAGGGTGTTAGAGCTGGGGTGTGGCTGTGGGGGAATCTGCTCTATGGTTGCTGTTGGCTCTGCTAATCTTGTCGTTGCCACTGACGGAGATCCGAGTGCTCTCAACCTCTTATCTCAAAACGTAACTTCAAATCTCGAGCCGCATTTCCTCACCAAACTAATTACGGAGAGACTGGAGTGGGGAAATAGCATCCATATCGAAACTATCAGAGAAATAAGCACAGGAGGTTTTGATATCATCATAGGGACCGATGTCACGTATGTTCCTGAAGCTATTTTGCCACTGTTTTCCACTGCAAAAGAGCTGATCTCATCCAGCAAAGATTCAGAATGTGCTTTGATTCTTTGCCACGTCCTGCGTCGAGTTGATGAGCCAACAATCGTTTCAACTGCTCATCAATTCGGTTTTAGGTTGACTGATTCTTGGACTGCAGGAGTCTCATCCAAGTCATCACAAAGCATTGTGAACTCTTGGTTCGCTGATAGAGATTGGGATATCCCAAGTACTGCTTTGAATATTATGTACTTCCTTTTAGAAAACTGA 3498 42.65 METENADELASSTASTLLPLASAAQQPYVSELLSFTLDRLNKEPELLQVDAERIRRQIQEVAVGNYQAFIAAADALLAIREEVSSIDKHLESLISEIPNLTSGCTEFVESAEQILEKRKMNQILLTHHSTLLDLLEIPQLMDTCIRNGNYDEALDLEAFVAKLSTMHPKIPVIQALVAEVRRTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGSEENYDSGLLFSWSMHQITSHLKTLKIMLPKITEGGSLSNILEQCMYCAMGLGWVGMDFRGLLPPLFEEAVLNLFSKNMGTAVDNFQLVLDSHRWVPLPAVGFPSSTIGEESQEDVTPPSYLMEHPPLAVFVNGVSAAMNELRHCAPLSLKHVIAQELIKGLQAVSDSLLRYNTTRMLKDNESGLFLQLCRAFIEVAYPHCATCFGRCYPGGATLILDAKNLYDGIGRLLTVSSSRELPKTVSNAEEKNVTENGDMPALENGATSDADKDQKSPSLHIITGTGVSRFHESYSERNYALSFEGESMALNGEQTMEQQTATQKIQIYSTSSTGVSPFWREKYEKDAKKYWDIFYKKHQDRFFKDRHYLDKEWGQYFFAEERKVVLEVSDVVSVGCGAGNTVFPLIATYPNVFIHACDFSPRAVNLVKTHKDFNESRVAAFVSDLTADDVSNHISPSSIDVVMMPTGCVLFRDYATGDLAQERFDCKDQKISENFYVRGDGTRAFYFSNEFLTSTFEENGFDVKELDVCCKQVENRSRDLIMNRFNVLFKLVLRVILGPFALPLRIAMFKFKLIIVIVLTTLNVNNMVHVWRWVQAVFSLSEFATPEAKLRAGFPGQVKTEPRPKENRSDGPVNDFELDFSEGVAVDMFGIPPSQDNEIVEVDVRGWNFKIKVLSREFQHTCKSTGLMLWESARLMASVLAENPAICAGKRVLELGCGCGGICSMVAVGSANLVVATDGDPSALNLLSQNVTSNLEPHFLTKLITERLEWGNSIHIETIREISTGGFDIIIGTDVTYVPEAILPLFSTAKELISSSKDSECALILCHVLRRVDEPTIVSTAHQFGFRLTDSWTAGVSSKSSQSIVNSWFADRDWDIPSTALNIMYFLLEN 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21900042 21911052 + Lsi04G014140.1 Lsi04g01414 661463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01414 1165 Pfam Lysine methyltransferase 954 1108 IPR019410 -
Lsi04g01414 1165 Gene3D Vaccinia Virus protein VP39 592 822 IPR029063 -
Lsi04g01414 1165 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 961 1089 IPR029063 -
Lsi04g01414 1165 CDD AdoMet_MTases 986 1088 - -
Lsi04g01414 1165 SUPERFAMILY Cullin repeat-like 131 348 IPR016159 -
Lsi04g01414 1165 Pfam Dor1-like family 29 362 IPR007255 GO:0017119
Lsi04g01414 1165 MobiDBLite consensus disorder prediction 515 553 - -
Lsi04g01414 1165 CDD AdoMet_MTases 665 739 - -
Lsi04g01414 1165 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 8 526 IPR007255 GO:0017119
Lsi04g01414 1165 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 612 828 IPR029063 -
Lsi04g01414 1165 Gene3D Vaccinia Virus protein VP39 924 1151 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01414 K20295 COG8; conserved oligomeric Golgi complex subunit 8 - csv:101211255 1027.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01414 Lsi-Chr4:21900042 Lsi10g01107 Lsi-Chr10:15317314 2.56E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01414 Lsi_Chr04 FPKM 15.488113 16.447102 10.366098 9.646544 17.780733 16.657034 18.431067 8.983088 7.000033 7.215516