Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01418 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCCGTCGCCACCGTCCTCCGTGCTGCACCGAGGAATTTCAGGGCTGTCCGCCAGGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTTTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCACGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCGGTGCAGCAATTGCTTAACGAGCATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGAGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAACTCAACTTCGCGAACAAATGCTTCGATTTATGCTCTTAAGAATTATGAGTTCGACAAAAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACAAGGTTGATGGAACAATCTCGCACCGAATCACTTGAGGTCACTCCACCTTCAAAGAGTTGTATTGAGTCTGTTGTTTCTAAACATTCCAAAAGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCTACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCCCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGTACATCGACAACTCCCGCGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCGAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGACAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.86 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAAPRNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESLEVTPPSKSCIESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21947617 21949412 + Lsi04G014180.1 Lsi04g01418 661467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01418 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Lsi04g01418 445 Gene3D - 87 137 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 389 424 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 342 445 - -
Lsi04g01418 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Lsi04g01418 445 Pfam Protein of unknown function (DUF4005) 340 422 IPR025064 -
Lsi04g01418 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 342 382 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 1 31 - -
Lsi04g01418 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Lsi04g01418 445 MobiDBLite consensus disorder prediction 12 30 - -
Lsi04g01418 445 SMART iq_5 112 133 IPR000048 GO:0005515
Lsi04g01418 445 SMART iq_5 89 111 IPR000048 GO:0005515
Lsi04g01418 445 MobiDBLite consensus disorder prediction 271 326 - -
Lsi04g01418 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Lsi04g01418 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01418 Lsi-Chr4:21947617 Lsi07g00304 Lsi-Chr7:3259617 5.45E-28 dispersed
Lsi01g00265 Lsi-Chr1:2367995 Lsi04g01418 Lsi-Chr4:21947617 7.34E-32 transposed
Lsi03g00860 Lsi-Chr3:14171976 Lsi04g01418 Lsi-Chr4:21947617 2.40E-45 transposed
Lsi06g00645 Lsi-Chr6:9554658 Lsi04g01418 Lsi-Chr4:21947617 8.12E-61 transposed
Lsi02g02925 Lsi-Chr2:35454079 Lsi04g01418 Lsi-Chr4:21947617 1.04E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01418 - - csv:101210019 816.609