Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01418 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCCGTCGCCACCGTCCTCCGTGCTGCACCGAGGAATTTCAGGGCTGTCCGCCAGGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTTTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCACGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCGGTGCAGCAATTGCTTAACGAGCATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGAGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAACTCAACTTCGCGAACAAATGCTTCGATTTATGCTCTTAAGAATTATGAGTTCGACAAAAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACAAGGTTGATGGAACAATCTCGCACCGAATCACTTGAGGTCACTCCACCTTCAAAGAGTTGTATTGAGTCTGTTGTTTCTAAACATTCCAAAAGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCTACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCCCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGTACATCGACAACTCCCGCGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCGAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGACAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.86 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAAPRNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESLEVTPPSKSCIESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21947617 21949412 + Lsi04G014180.1 Lsi04g01418 661467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01418 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Lsi04g01418 445 Gene3D - 87 137 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 389 424 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 342 445 - -
Lsi04g01418 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Lsi04g01418 445 Pfam Protein of unknown function (DUF4005) 340 422 IPR025064 -
Lsi04g01418 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 342 382 - -
Lsi04g01418 445 MobiDBLite consensus disorder prediction 1 31 - -
Lsi04g01418 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Lsi04g01418 445 MobiDBLite consensus disorder prediction 12 30 - -
Lsi04g01418 445 SMART iq_5 112 133 IPR000048 GO:0005515
Lsi04g01418 445 SMART iq_5 89 111 IPR000048 GO:0005515
Lsi04g01418 445 MobiDBLite consensus disorder prediction 271 326 - -
Lsi04g01418 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Lsi04g01418 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01418 - - - csv:101210019 816.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01418 Lsi-Chr4:21947617 Lsi07g00304 Lsi-Chr7:3259617 5.45E-28 dispersed
Lsi01g00265 Lsi-Chr1:2367995 Lsi04g01418 Lsi-Chr4:21947617 7.34E-32 transposed
Lsi03g00860 Lsi-Chr3:14171976 Lsi04g01418 Lsi-Chr4:21947617 2.40E-45 transposed
Lsi06g00645 Lsi-Chr6:9554658 Lsi04g01418 Lsi-Chr4:21947617 8.12E-61 transposed
Lsi02g02925 Lsi-Chr2:35454079 Lsi04g01418 Lsi-Chr4:21947617 1.04E-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01418 Lsi_Chr04 FPKM 0.681998 0.69607 1.347515 1.29035 0.215038 0.0 0.0 0.0 0.0 0.0