Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01419 ATGCAGAATAACGAAAGAATAAAAGGACTTCAATGGTCGTTTCATTATTTCCACTCCAATAATCATTCGTGTACCGACAAAAGTACCTACCTTAGTGAAACTCCCACTGCCACCCCCTCCTTTCCATTTTCATTTCCTCACCATTTGCCTTATTTAAACACAAATGAAACACCACAACCAAATAAACTCTCAACAGTCAACGCAGTCCCTCCCTTTCCCTTTCTCCTTCTTCTCTCTCCCTTTTCCTCGGTTTGGGTATCGAGAAAAATGGATGATTTTCTTCAATCAGTGTTGGCGAGTGTGTCTATGGGAGTGGGTGCAATATTGTTCACGACGTTGTGCGTCGTGGGAGGTGGGTTGGTTTATTTCTATGGACCTTACTGGGGAGTGAGAAGGGTGCCTGGGCCACCAGCTATTCCGCTGGTCGGACACCTTCCCTTACTGGCCAAGTACGGCCCAGACGTTTTCTCTGTCCTCGCCTCCCAATATGGTCCTATCTTCAGGTTTCATATGGGTAGGCAGCCGTTGATAATAATAGCAGACCCTGAGCTTTGTAAAGAAGTCGGTATCAAGAAATTCAAGGACATCCCAAATAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGAGGAGAAAAAACGCTCTATCAACTGCTTATTAACGCCTCTATTCAATTTTACAGGGATGCAAGATGGTCGACAATGCGAAACACGATACTATCGGTCTATCAGCCCTCTCATCTAACGAGCCTAATACCTACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGGAAGATATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACTGATGTGATTGGAACGGCAGCCTTCGGTGTTAACTTTGGGCTCTCTAATCCACAAGCAACCAAAACTTGTGGTACCAATGGCCATCATGACAGCAAAACTGATGAAGTTTCGGACTTCATCAATCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCAGGTTCCTTCTCAATCATTTTGGGACTACTTGTCCCTATACTCCAAGAACCATTTAGACAAATCCTGAAGAGAATACCATTCACTATGGACTGGAAAGTTGATCGGACAAATCAGAAGTTGAGTGGTCGGCTTAATGAGATTGTGGACAAGAGAATGAAGTGTAACGATCGAGGTTCAAAAGACTTCTTATCACTCATTTTGAGAGCAAGAGAGTCAGAGACGGTGTCAAGGAATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTACGAACACCTACTTGCTGGGTCAGCTACCACGGCATTCACATTGTCTTCTATTGTATATTTAATTGCTGGACATCCAGAAGTCGAGAAGAAGTTGCTTGAAGAGATTGACAACTTTGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCCCCTCTAGTAGCTAGGGAGACGTCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGGACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAACTTTCCAGAACCAGATCAATTTAAGCCAGAGAGGTTTGATCCGAATGAGGAAGAGGAGAAACAAAGGCACCCCTATGCTTTAATCCCATTTGGAATTGGTCCTCGAGCATGCATTGGTCAAAAATTCGCCCTTCAGGAATTGAAGCTCTCTCTGATTCATTTGTATAGGAAGTTTGTATTTCGGCATTCCCTCTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATAAATCGTAAATAA 1920 43.44 MQNNERIKGLQWSFHYFHSNNHSCTDKSTYLSETPTATPSFPFSFPHHLPYLNTNETPQPNKLSTVNAVPPFPFLLLLSPFSSVWVSRKMDDFLQSVLASVSMGVGAILFTTLCVVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRGEKTLYQLLINASIQFYRDARWSTMRNTILSVYQPSHLTSLIPTMQSIIETATQNLHSSVEEDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCGTNGHHDSKTDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQILKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKCNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSIVYLIAGHPEVEKKLLEEIDNFGPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDQFKPERFDPNEEEEKQRHPYALIPFGIGPRACIGQKFALQELKLSLIHLYRKFVFRHSLSMEQPLELEYGVILNFKNGVKLRVINRK 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21949301 21952797 - Lsi04G014190.1 Lsi04g01419 661468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01419 639 Pfam Cytochrome P450 232 624 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 Pfam Cytochrome P450 134 222 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PANTHER THROMBOXANE-A SYNTHASE 104 638 - -
Lsi04g01419 639 Gene3D Cytochrome P450 124 639 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 292 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 537 561 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 584 607 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 497 515 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 574 584 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 160 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 433 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS E-class P450 group I signature 453 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 577 586 IPR017972 GO:0005506|GO:0016705
Lsi04g01419 639 SUPERFAMILY Cytochrome P450 126 638 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS P450 superfamily signature 575 584 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS P450 superfamily signature 498 509 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS P450 superfamily signature 584 595 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PRINTS P450 superfamily signature 444 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01419 639 PANTHER CYTOCHROME P450 FAMILY PROTEIN 104 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01419 Lsi-Chr4:21949301 Lsi02g00428 Lsi-Chr2:3544134 9.29E-33 dispersed
Lsi04g01419 Lsi-Chr4:21949301 Lsi04g01505 Lsi-Chr4:22690699 2.21E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01419 K20771 - csv:101209772 999.964