Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01423 | ATGATGATGATGATGAAAGAAAATTTAATGGTGGATGAGAATTTGTCAGTCTTGACTTGTGCTTCTGGAGAAATAATAACAAGAAGTGAAATTACCACTACTGGCCCTATGTTTTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCGCCATTGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCTGGCAACCCAGACCCAGAAGCGGAAGTGATAGCCTTATCACCAAAATCGCTTCTGGCGACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAACTCCATAGAAGAGGGCACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAACGACGTGCGTGCACCATCACCCATCGAGGGCTCTCGGTGATCTAACCGGGATCAAAAAGCACTTCTGCAGAAAGCATGAGGCGTCGTTTGAAGAAGCTCTCAATGGGATACTGATGAATCATAATAATAATAATAATAGAGCTAATAAAGACGGTGTCAAAGGCGGTGGTGGCGCTGCAGCCGGAGATATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATTTTTCAGAATCATGAGATGAGTCTAGTTAAAATAACTAACGAAAATAAAAGGAAGGAGAAGAAGGTCGGTGAAGAGAAATGGAGAAAGGAGAAATATCTTGGAAGGGTTAGGAACCCTAGTTTTCTTAATTTCTGGGGTTTTCAGCTTTCTCAACGATTATTATTAACACGATGTTGCGATTTTATTTACGTGGCGGCAGTTTCGTTTCATTTCCTCGTTGCTAGCTTCGAGGGTTACCTAATGGGCTTGCGTCGCGGTGAACACTTGTTGAACAATATATATAAATTCTTGGCGGCTCAGAAGAGATATCAGTCGAGCTATGTTGGGAATCTAGCTCGAAGAGTGCGGGATGCCGATGAGGCCAGTGAAGTTGCTCATCTGAAAGAACTATTCCGTCGAAATGATCCTGAAGCTGTTATAAGATTATTTGAAACTCAGCCATCATTGCACCACAATGCTACTGCACTTTCTGAATATGTTAAAGCGTTGGTGAAAGTTGACAGGCTGGATGAGAGTGAACTACTTAAGACATTGCAAAGAGGCATTTCAAGCGCATCTAGGGGAGAAGAAAGCATTGGTAGCATAGCGGCTTTCAAAAATGTTGGAAAACAGTCAAAAGAAGGTATTCTTGGAACCTCAAGTTCTCCCATCCATATGGTGGCTACTGAAGGGGGCCACTTTAAGGAGCAGCTCTGGCGTACAATTCGCACTATTGCATTGGCCTTTCTATTGATTTCTGGTGTAGGAGCACTCATTGAGGATAGAGGAATTAGCAAAGGTCTTGGTTTGAATGAGGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTTAAGGGTGTAGATGAAGCTAAGGCAGAGCTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGATTCACTCGTTTGGGTGGCAAGCTCCCAAAAGGTGTTCTACTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCGATTGCTGGAGAAGCTGGGGTACCATTCTTCTCCTGCAGCGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTGTTTTCTGCTGCAAAGAAGCGGTCACCATGTATTATTTTCATTGATGAAATTGATGCCATTGGAGGAAGCCGAAACCCCAAGGATCAGCAGTATATGAAAATGACTCTTAACCAGTTACTTGTTGAACTTGATGGCTTTAAGCAAAATGAAGGAATTATTGTCATTGCAGCAACAAACTTTCCAGAGTCTTTAGACAAGGCATTAGTAAGACCTGGTCGATTTGATCGCCACATTGTTGTACCTAATCCTGATGTTGAAGGACGAAGGCAAATCCTGGAATCACATATGTCGAAGATATTGAAGGCAGATGATGTTGATATGATGATCATTGCAAGGGGAACTCCTGGTTTTTCTGGTGCTGATCTTGCAAATTTAGTTAATATAGCTGCTTTAAAGGCTGCCATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTAGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCCGCTGTTATTTCTGATGAGTCACGAAAATTGACTGCATTTCATGAGGGTGGCCATGCCCTTGTGGCAATCCACACTGATGGAGCGCTTCCAGTTCACAAGGCCACCATTGTTCCGAGAGGAATGGCTCTTGGCATGGTTGCACAATTGCCTGATAAGGACGAAACTAGTGTCTCCCGCAAACAGATGCTTGCTCGTCTTGATGTTTGCATGGGAGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAACGAAGTCACTTCTGGTGCTTCATCTGATTTGCAGCAAGCAACGTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTTGGGCTTGTCGCCCACAATTACGATGACAATGGGAAAAGCATGAGTACAGAAACAAGGCTTCTAATTGAACAGGAAGTGAAGAACTTCTTAGAAGCGGCCTACACCAATGCAAAAACAATTCTTACTACCCATAACAAGGAGCTTCACGCCCTTGCGAATGCTTTGCTTGAACAAGAGACACTCTCTGGTAGTCAGATCATGGCCCTTCTTGCACAGGTAAACTCTCAGCAGCAGCAGCAGCAACAACAACATCAACAATTAGTTTCCACACAGAGTAGCTCACAGTCCAACCCCGTGCCACCCTCAGTGCCAAACCCTGCTGCATCTGCAGCCGCTGCAGCAGCAGCAGCGGCGGCGGCAGCTACTGCTGCAGCCAAAGCTAAAGGCATTGCTCCTGTTGGATCTTAG | 2964 | 44.77 | MMMMMKENLMVDENLSVLTCASGEIITRSEITTTGPMFSHQSSASTNQPLPPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPETTCVHHHPSRALGDLTGIKKHFCRKHEASFEEALNGILMNHNNNNNRANKDGVKGGGGAAAGDITRDFLGLRPVAGTQPDHPIFQNHEMSLVKITNENKRKEKKVGEEKWRKEKYLGRVRNPSFLNFWGFQLSQRLLLTRCCDFIYVAAVSFHFLVASFEGYLMGLRRGEHLLNNIYKFLAAQKRYQSSYVGNLARRVRDADEASEVAHLKELFRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGISSASRGEESIGSIAAFKNVGKQSKEGILGTSSSPIHMVATEGGHFKEQLWRTIRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEQEVKNFLEAAYTNAKTILTTHNKELHALANALLEQETLSGSQIMALLAQVNSQQQQQQQQHQQLVSTQSSSQSNPVPPSVPNPAASAAAAAAAAAAAATAAAKAKGIAPVGS | 987 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21985141 | 21996099 | + | Lsi04G014230.1 | Lsi04g01423 | 661472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01423 | 987 | MobiDBLite | consensus disorder prediction | 932 | 950 | - | - | |
Lsi04g01423 | 987 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 90 | 110 | IPR013087 | - | |
Lsi04g01423 | 987 | Pfam | ATPase family associated with various cellular activities (AAA) | 530 | 659 | IPR003959 | GO:0005524|GO:0016887 | |
Lsi04g01423 | 987 | PANTHER | METALLOPROTEASE M41 FTSH | 315 | 960 | - | - | |
Lsi04g01423 | 987 | SMART | AAA_5 | 526 | 662 | IPR003593 | - | |
Lsi04g01423 | 987 | ProSitePatterns | AAA-protein family signature. | 630 | 648 | IPR003960 | GO:0005524|GO:0016887 | |
Lsi04g01423 | 987 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 88 | 110 | IPR013087 | - | |
Lsi04g01423 | 987 | SUPERFAMILY | FtsH protease domain-like | 741 | 926 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Lsi04g01423 | 987 | Pfam | Peptidase family M41 | 741 | 920 | IPR000642 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Lsi04g01423 | 987 | MobiDBLite | consensus disorder prediction | 48 | 63 | - | - | |
Lsi04g01423 | 987 | MobiDBLite | consensus disorder prediction | 932 | 961 | - | - | |
Lsi04g01423 | 987 | MobiDBLite | consensus disorder prediction | 35 | 71 | - | - | |
Lsi04g01423 | 987 | CDD | AAA | 527 | 659 | - | - | |
Lsi04g01423 | 987 | TIGRFAM | FtsH_fam: ATP-dependent metallopeptidase HflB | 485 | 922 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Lsi04g01423 | 987 | Hamap | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 1 | 954 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Lsi04g01423 | 987 | Pfam | AAA+ lid domain | 682 | 725 | IPR041569 | - | |
Lsi04g01423 | 987 | Gene3D | - | 661 | 734 | - | - | |
Lsi04g01423 | 987 | PANTHER | ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE | 315 | 960 | - | - | |
Lsi04g01423 | 987 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 490 | 747 | IPR027417 | - | |
Lsi04g01423 | 987 | Gene3D | Peptidase M41 | 735 | 934 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Lsi04g01423 | 987 | Gene3D | - | 478 | 660 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01423 | Lsi-Chr4:21985141 | Lsi09g00035 | Lsi-Chr9:318065 | 1.18E-144 | dispersed | |
Lsi04g01423 | Lsi-Chr4:21985141 | Lsi10g01391 | Lsi-Chr10:18019302 | 4.56E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25195 | PF01434 | Peptidase_M41 | 8.00E-67 | CL0126 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01423 | K08955 | - | csv:101209284 | 1155.2 |