Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01423 ATGATGATGATGATGAAAGAAAATTTAATGGTGGATGAGAATTTGTCAGTCTTGACTTGTGCTTCTGGAGAAATAATAACAAGAAGTGAAATTACCACTACTGGCCCTATGTTTTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCGCCATTGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCTGGCAACCCAGACCCAGAAGCGGAAGTGATAGCCTTATCACCAAAATCGCTTCTGGCGACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAACTCCATAGAAGAGGGCACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAACGACGTGCGTGCACCATCACCCATCGAGGGCTCTCGGTGATCTAACCGGGATCAAAAAGCACTTCTGCAGAAAGCATGAGGCGTCGTTTGAAGAAGCTCTCAATGGGATACTGATGAATCATAATAATAATAATAATAGAGCTAATAAAGACGGTGTCAAAGGCGGTGGTGGCGCTGCAGCCGGAGATATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATTTTTCAGAATCATGAGATGAGTCTAGTTAAAATAACTAACGAAAATAAAAGGAAGGAGAAGAAGGTCGGTGAAGAGAAATGGAGAAAGGAGAAATATCTTGGAAGGGTTAGGAACCCTAGTTTTCTTAATTTCTGGGGTTTTCAGCTTTCTCAACGATTATTATTAACACGATGTTGCGATTTTATTTACGTGGCGGCAGTTTCGTTTCATTTCCTCGTTGCTAGCTTCGAGGGTTACCTAATGGGCTTGCGTCGCGGTGAACACTTGTTGAACAATATATATAAATTCTTGGCGGCTCAGAAGAGATATCAGTCGAGCTATGTTGGGAATCTAGCTCGAAGAGTGCGGGATGCCGATGAGGCCAGTGAAGTTGCTCATCTGAAAGAACTATTCCGTCGAAATGATCCTGAAGCTGTTATAAGATTATTTGAAACTCAGCCATCATTGCACCACAATGCTACTGCACTTTCTGAATATGTTAAAGCGTTGGTGAAAGTTGACAGGCTGGATGAGAGTGAACTACTTAAGACATTGCAAAGAGGCATTTCAAGCGCATCTAGGGGAGAAGAAAGCATTGGTAGCATAGCGGCTTTCAAAAATGTTGGAAAACAGTCAAAAGAAGGTATTCTTGGAACCTCAAGTTCTCCCATCCATATGGTGGCTACTGAAGGGGGCCACTTTAAGGAGCAGCTCTGGCGTACAATTCGCACTATTGCATTGGCCTTTCTATTGATTTCTGGTGTAGGAGCACTCATTGAGGATAGAGGAATTAGCAAAGGTCTTGGTTTGAATGAGGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTTAAGGGTGTAGATGAAGCTAAGGCAGAGCTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGATTCACTCGTTTGGGTGGCAAGCTCCCAAAAGGTGTTCTACTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCGATTGCTGGAGAAGCTGGGGTACCATTCTTCTCCTGCAGCGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTGTTTTCTGCTGCAAAGAAGCGGTCACCATGTATTATTTTCATTGATGAAATTGATGCCATTGGAGGAAGCCGAAACCCCAAGGATCAGCAGTATATGAAAATGACTCTTAACCAGTTACTTGTTGAACTTGATGGCTTTAAGCAAAATGAAGGAATTATTGTCATTGCAGCAACAAACTTTCCAGAGTCTTTAGACAAGGCATTAGTAAGACCTGGTCGATTTGATCGCCACATTGTTGTACCTAATCCTGATGTTGAAGGACGAAGGCAAATCCTGGAATCACATATGTCGAAGATATTGAAGGCAGATGATGTTGATATGATGATCATTGCAAGGGGAACTCCTGGTTTTTCTGGTGCTGATCTTGCAAATTTAGTTAATATAGCTGCTTTAAAGGCTGCCATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTAGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCCGCTGTTATTTCTGATGAGTCACGAAAATTGACTGCATTTCATGAGGGTGGCCATGCCCTTGTGGCAATCCACACTGATGGAGCGCTTCCAGTTCACAAGGCCACCATTGTTCCGAGAGGAATGGCTCTTGGCATGGTTGCACAATTGCCTGATAAGGACGAAACTAGTGTCTCCCGCAAACAGATGCTTGCTCGTCTTGATGTTTGCATGGGAGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAACGAAGTCACTTCTGGTGCTTCATCTGATTTGCAGCAAGCAACGTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTTGGGCTTGTCGCCCACAATTACGATGACAATGGGAAAAGCATGAGTACAGAAACAAGGCTTCTAATTGAACAGGAAGTGAAGAACTTCTTAGAAGCGGCCTACACCAATGCAAAAACAATTCTTACTACCCATAACAAGGAGCTTCACGCCCTTGCGAATGCTTTGCTTGAACAAGAGACACTCTCTGGTAGTCAGATCATGGCCCTTCTTGCACAGGTAAACTCTCAGCAGCAGCAGCAGCAACAACAACATCAACAATTAGTTTCCACACAGAGTAGCTCACAGTCCAACCCCGTGCCACCCTCAGTGCCAAACCCTGCTGCATCTGCAGCCGCTGCAGCAGCAGCAGCGGCGGCGGCAGCTACTGCTGCAGCCAAAGCTAAAGGCATTGCTCCTGTTGGATCTTAG 2964 44.77 MMMMMKENLMVDENLSVLTCASGEIITRSEITTTGPMFSHQSSASTNQPLPPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPETTCVHHHPSRALGDLTGIKKHFCRKHEASFEEALNGILMNHNNNNNRANKDGVKGGGGAAAGDITRDFLGLRPVAGTQPDHPIFQNHEMSLVKITNENKRKEKKVGEEKWRKEKYLGRVRNPSFLNFWGFQLSQRLLLTRCCDFIYVAAVSFHFLVASFEGYLMGLRRGEHLLNNIYKFLAAQKRYQSSYVGNLARRVRDADEASEVAHLKELFRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGISSASRGEESIGSIAAFKNVGKQSKEGILGTSSSPIHMVATEGGHFKEQLWRTIRTIALAFLLISGVGALIEDRGISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEQEVKNFLEAAYTNAKTILTTHNKELHALANALLEQETLSGSQIMALLAQVNSQQQQQQQQHQQLVSTQSSSQSNPVPPSVPNPAASAAAAAAAAAAAATAAAKAKGIAPVGS 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21985141 21996099 + Lsi04G014230.1 Lsi04g01423 661472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01423 987 MobiDBLite consensus disorder prediction 932 950 - -
Lsi04g01423 987 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lsi04g01423 987 Pfam ATPase family associated with various cellular activities (AAA) 530 659 IPR003959 GO:0005524|GO:0016887
Lsi04g01423 987 PANTHER METALLOPROTEASE M41 FTSH 315 960 - -
Lsi04g01423 987 SMART AAA_5 526 662 IPR003593 -
Lsi04g01423 987 ProSitePatterns AAA-protein family signature. 630 648 IPR003960 GO:0005524|GO:0016887
Lsi04g01423 987 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Lsi04g01423 987 SUPERFAMILY FtsH protease domain-like 741 926 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lsi04g01423 987 Pfam Peptidase family M41 741 920 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lsi04g01423 987 MobiDBLite consensus disorder prediction 48 63 - -
Lsi04g01423 987 MobiDBLite consensus disorder prediction 932 961 - -
Lsi04g01423 987 MobiDBLite consensus disorder prediction 35 71 - -
Lsi04g01423 987 CDD AAA 527 659 - -
Lsi04g01423 987 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 485 922 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lsi04g01423 987 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 954 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lsi04g01423 987 Pfam AAA+ lid domain 682 725 IPR041569 -
Lsi04g01423 987 Gene3D - 661 734 - -
Lsi04g01423 987 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 315 960 - -
Lsi04g01423 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 747 IPR027417 -
Lsi04g01423 987 Gene3D Peptidase M41 735 934 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lsi04g01423 987 Gene3D - 478 660 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01423 Lsi-Chr4:21985141 Lsi09g00035 Lsi-Chr9:318065 1.18E-144 dispersed
Lsi04g01423 Lsi-Chr4:21985141 Lsi10g01391 Lsi-Chr10:18019302 4.56E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25195 PF01434 Peptidase_M41 8.00E-67 CL0126 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01423 K08955 - csv:101209284 1155.2