Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01431 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAGCGATGCCCGACCTGTGACACGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCCTCCTCTTCTGGGTCTTCCTCGTCTTTGTCTATGGCGTCTTCCACTACAATGGGGAGATTGGAGGCTGTTGAATCAGTCGTTGATCCGGCGGCTCCTGGAGATGTCGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCCAGACAAGACACTGAATCCGCTCAGATCGATGCTGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAGTCTCCGGCAGTAAAGCCCTCGCCGAATTTCTCTCGCTTCAATATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTGTACGGCATTACTGCAAACTCTAGCACCCGAGGAAAGATGCCACTTTTAGTTGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGTCTGGTTCAAAAAATTGCTGATATAGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCCCTGAACACTATTATTCTACCTCTTGGACGTCTAGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATGGTTTTGATAGGAGGCCTGCAGATGTTATAGAAGTTCCTGAAGATATGCCAGTATTACAAAATGAAGAAGCTGAAGCAGTATCAATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTTAATATGCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACTTTAGGAACTTTATTGAAGAAATTCAAACTAGGAGTTCTGATTTTGATTTTGCGAAGCTTCTAGAATCAGAAAACAGTGCGTGTGATAGTTCATTGGGTGCATGTGCACAGTCCGCATCTGCACAAAAGAAGAAGGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCGGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCACAGGATAATGGTGAAAGAAAAGCGACTTTTCAAATGTATCCAATCAATGGAAAAGGCATAGATGTTGGGCTTCAGAGCCACCCCTATATTTTAGCAAACCACGGACAGTCTTCTGCTACTTCTACTGAAACAGAGTATTTAAACAATGTTGTCCGCGAAAATAAGCAGAAAGTGTCTGCCGAGGGATCATCTGAAGAACAAACGCCTGATAAAAATTCAAACAAGCACAGTATTTTTTGGCCTTACAGTATGAAAAATGAGGGCTTTGTGTTTGTCGATGTTAATGGGGAAACAGGAAAATTGGTTGATGTTAATGGAACTTTTCATCGTGAACATGTGGATGGTGTTTCGTTGACATCTGATGCCAACTCTCATAAAAGACTAGGAAGTGCCTTAGTGAGTGAAGAGAGAAGATTGTTACAAGATACGAGCGGTGGAAATCTCCACTGCTTTGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATAGCAAACTGCATGCTAGTGATGACCACAGTGAGACAATTGACCCAATATTAGGGTCATATGGCGAGGTTTATCGAGCAGACTGGAATGGAACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTTGTGATTTTGGTTTGTCACGAGTCAAGCAGAATACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAACGAACCAGCCAACGAAAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTAACAACATGCCGGATACCATGGAAAGGTTTGAATCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAGAATAGGCGCTTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCACAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTTCGGAAAACATACTCCGGGAATCAAATATCGGAGTGA 2571 42.59 MSKMKHLLRKLHIGGGLNEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAAPGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDMPVLQNEEAEAVSISSTQDGVANVCNLICKEASDLDAQSKENFRNFIEEIQTRSSDFDFAKLLESENSACDSSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGERKATFQMYPINGKGIDVGLQSHPYILANHGQSSATSTETEYLNNVVRENKQKVSAEGSSEEQTPDKNSNKHSIFWPYSMKNEGFVFVDVNGETGKLVDVNGTFHREHVDGVSLTSDANSHKRLGSALVSEERRLLQDTSGGNLHCFDLRENPHENLLEIDNSKLHASDDHSETIDPILGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSQLRPSFSQLITRLRRLQRLVRKTYSGNQISE 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22044056 22052789 + Lsi04G014310.1 Lsi04g01431 661480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01431 856 Pfam Ethylene-responsive protein kinase Le-CTR1 144 348 - -
Lsi04g01431 856 MobiDBLite consensus disorder prediction 560 579 - -
Lsi04g01431 856 SUPERFAMILY Protein kinase-like (PK-like) 688 845 IPR011009 -
Lsi04g01431 856 Pfam Protein tyrosine and serine/threonine kinase 721 838 IPR001245 GO:0004672|GO:0006468
Lsi04g01431 856 MobiDBLite consensus disorder prediction 1 64 - -
Lsi04g01431 856 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 83 725 - -
Lsi04g01431 856 Gene3D Phosphorylase Kinase; domain 1 684 720 - -
Lsi04g01431 856 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 724 850 - -
Lsi04g01431 856 Gene3D Transferase(Phosphotransferase) domain 1 721 844 - -
Lsi04g01431 856 MobiDBLite consensus disorder prediction 44 64 - -
Lsi04g01431 856 PANTHER SERINE-THREONINE PROTEIN KINASE 83 725 - -
Lsi04g01431 856 PANTHER SERINE-THREONINE PROTEIN KINASE 724 850 - -
Lsi04g01431 856 ProSiteProfiles Protein kinase domain profile. 499 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00226 Lsi-Chr2:1899950 Lsi04g01431 Lsi-Chr4:22044056 1.12E-56 dispersed
Lsi04g01431 Lsi-Chr4:22044056 Lsi06g00200 Lsi-Chr6:2196603 3.10E-14 dispersed
Lsi04g01431 Lsi-Chr4:22044056 Lsi03g01941 Lsi-Chr3:30804861 6.68E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83588 PF14381 EDR1 4.30E-73 CL0125 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01431 K04424 - csv:101214554 1221.07