Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01433 ATGAAGCCGGAAGCAGTTTATGATGTTGAACTTATCAGTTCTTCGCAGAGCATAAAACATGAATTTTGGCCTCTAGATCCAATTGATCCGGTTCAAGCAAAGTTCCCGTGCTGTTTGGTTTGGACTCCTCTTCCTGTTGTCTCTTGGTTGGCACCTTTCATTGGCCATGTTGGGATTTGCAGGGAGGATGGAATCATTTTAGATTTCGCAGGATCGAATTTTGTGAATACCAATGATTTTGCATTTGGTTCTGTTGCAAGATACCATCAACTCGACAGAGAAAAATGTTGCTTCCCCACGAGCTTAGCTGCACATAAATGTAAGCAGGGCTACCAGCATTCAGAGTATGGAACTGCCATTACCTGGGACGATGGCCTCCAATCAAGTACACGGTATTTCGAGCATAAATCGTACAACCTTTTTACATGCAACTGCCATTCCTTTATTGCCAATTGTCTGAACCGTCTTTGTTACGATGGATCAATGAGTTGGAACATGATAAATGTAGCAGCTCTAATTCTGTTCAAGGGACATTGGGTTAATGGCATGTCAATTGTAAGATCATTCCTTCCCTTTATACTGGTGGTCTGCCTGGGCATTGCCATGGTTGGATGGCCCTTCTTGATTGGTCTGTTTTCGCTTCCTCTCCTTTTGGTTGGTTGGTTTGTTCTGGAAAATCCTGTATCCGAATGGACCCAATCTATACTTGGTTCGATCAAATCCAAGTCATCGATCCCTAGTCATACGGATTCACCGCCCCAGAATCCCAACTCTAACCGACCCACCTACGAACTTTCGCAGCTGATCATTTACACGTTTCCAACTGTGGCCACAATCCAGCTCTCTCGGCCATTCTTTTGCTCTGTTTTCTGCTATTCCAATTTCTTCACTCGGGGCATGTCCTCTTCGCCGTCTCCGAATGCGAACGATGAGGAAGCTGTTCGAAGGAACCGAATTCTCTCCAGCAAGCTGTATTTTGATGTTCCTTCTTCAAAGGTTCCGGTGATATATTCCTCATTGTACGACATCTCATTTCTTGGAATAGAGAAGTTGCATCCATTTGATTCGAAGAAATGGGGTCGTGTATGCCAATTCCTTATTGCGGCTGGAGTTCTAAGGAAAGATCAAATCATCGAGCCTTTGGAAGCTAAGAAGAATGATCTTCTTGTGGTACATCCGGAATCATACTTGAATAGTCTGAAGAACAGTTCGAATGTTGCTAAGATTATTGAGGTCCCTCCTGTTGCATTGTTTCCTCACTGTCTTGTTAAGGAGAAAGTTCAACGTCCATTTCGTAACCAGGTTGGAGGGAGCATATTAGCTGGAAAAATAGCAAAAGAGAGAGGATGGGCCATCAATGTAGGAGGTGGTTTTCACCATTGTTCAGCAGAACAAGGAGGGGGATTTTGTGTGTATGCAGATATTTCTCTGTGTATACACTACGCCTTTGTTCAGCTAAATATATCAAGGGTAATGATTATTGATCTTGATGCCCATCAAGGAAATGGCCATGAAATGGATTTTGCCCATGATAGACGAGTATATATTCTTGATATGTTCAATCCTGGAATATATCCATTTAGTGGGACCACAACAAGTGAATACTTGAAGAAATTAGATGAAGCACTCGAGGTTGCTGCCAGTTCATATGATCCAGAATTAATTGTTTACAATGCTGGGACTGATATTCTAGATGGAGATCCTCTAGGCTTGTTAAAGATTAGTGCTGAGGGAATAGCCAAGAGAGATGAAAAGGTTTTCAGATTTGCCTGTGCGAGGAACATTCCCATTGTGATGCTGACGTCAGGCGGTTACATGAAATCTAGCGCTAAAGTCATTGCTGATTCAATTGAAAATCTCTCCAAGCGAAGTTTAATCGATACAGAAAGCTCTACAGGCAGAATGGTAGGATGGGTGAAATCCAAGGCAAGTCGACGGGAAAACCCAAGTCCTAGTGGGATGAGTGAGGACAAAAGCAGCATTGAGTTTGATTGGAGGCAGAGAAAGGCAGACATTATAAGCCTGAGATTGATGTCTCATCCCCAATGGCTTATAAACAGAATAGATGTAAACATTGATGTAATGGCGGCGAAGAAAACGTCACCGTTGCAGGGATTAGAAGCAGATGAATACCAAGAGCTTGAACCTCTCATTCAAACTTACCACAAATTTGAAGCTTTTCCTAACACTACCACTTCCCTCATTACCCAACGCATCGATGCTCCTCTTGACGCCGTCTGGCCCTTCGTTCGCAGCTTCGATAATCCCCAGAAGTATAAACACTTCATCAAAAGCTGTAACATGTCAGGGGATGGCGGGGTGGGGAGCATCAGAGAGGTGACGGTGGTCTCCGGCCTTCCGGCGTCGACAAGCACAGAAAGGCTAGAGATTTTGGACGACGAGAAGCATATTTTGAGCTTCAGGGTGGTCGGAGGAGAGCACCGGCTGAACAATTACCGATCAGTGACGTCGGTGAACGAGTTCAACAAAGACGGCAAAGTTTACACCGTCGTTTTGGAGTCTTACATCGTCGACATACCGGAAGGAAACACCGGCGAGGACACCAAAATGTTTGTCGACACTGTCATCAAATTGAATCTTCAAAAACTTGCTGGAGTTGCCACAGCCTCTCTGCATGAACATGAATAG 2649 44.13 MKPEAVYDVELISSSQSIKHEFWPLDPIDPVQAKFPCCLVWTPLPVVSWLAPFIGHVGICREDGIILDFAGSNFVNTNDFAFGSVARYHQLDREKCCFPTSLAAHKCKQGYQHSEYGTAITWDDGLQSSTRYFEHKSYNLFTCNCHSFIANCLNRLCYDGSMSWNMINVAALILFKGHWVNGMSIVRSFLPFILVVCLGIAMVGWPFLIGLFSLPLLLVGWFVLENPVSEWTQSILGSIKSKSSIPSHTDSPPQNPNSNRPTYELSQLIIYTFPTVATIQLSRPFFCSVFCYSNFFTRGMSSSPSPNANDEEAVRRNRILSSKLYFDVPSSKVPVIYSSLYDISFLGIEKLHPFDSKKWGRVCQFLIAAGVLRKDQIIEPLEAKKNDLLVVHPESYLNSLKNSSNVAKIIEVPPVALFPHCLVKEKVQRPFRNQVGGSILAGKIAKERGWAINVGGGFHHCSAEQGGGFCVYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEMDFAHDRRVYILDMFNPGIYPFSGTTTSEYLKKLDEALEVAASSYDPELIVYNAGTDILDGDPLGLLKISAEGIAKRDEKVFRFACARNIPIVMLTSGGYMKSSAKVIADSIENLSKRSLIDTESSTGRMVGWVKSKASRRENPSPSGMSEDKSSIEFDWRQRKADIISLRLMSHPQWLINRIDVNIDVMAAKKTSPLQGLEADEYQELEPLIQTYHKFEAFPNTTTSLITQRIDAPLDAVWPFVRSFDNPQKYKHFIKSCNMSGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFNKDGKVYTVVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLAGVATASLHEHE 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22064089 22076570 + Lsi04G014330.1 Lsi04g01433 661482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01433 882 Pfam Histone deacetylase domain 352 531 IPR023801 -
Lsi04g01433 882 PANTHER HISTONE DEACETYLASE 11 308 631 - -
Lsi04g01433 882 MobiDBLite consensus disorder prediction 639 660 - -
Lsi04g01433 882 Pfam Polyketide cyclase / dehydrase and lipid transport 736 873 IPR019587 -
Lsi04g01433 882 SUPERFAMILY Arginase/deacetylase 330 615 IPR023696 -
Lsi04g01433 882 PANTHER HISTONE DEACETYLASE 11 308 631 - -
Lsi04g01433 882 PRINTS Histone deacetylase superfamily signature 456 479 IPR000286 -
Lsi04g01433 882 PRINTS Histone deacetylase superfamily signature 552 562 IPR000286 -
Lsi04g01433 882 PRINTS Histone deacetylase superfamily signature 490 505 IPR000286 -
Lsi04g01433 882 Pfam Protein of unknown function (DUF778) 94 179 IPR008496 -
Lsi04g01433 882 Pfam Protein of unknown function (DUF778) 44 93 IPR008496 -
Lsi04g01433 882 CDD PYR_PYL_RCAR_like 732 874 - -
Lsi04g01433 882 CDD HDAC_classIV 352 620 IPR044150 GO:0004407|GO:0016575
Lsi04g01433 882 SUPERFAMILY Bet v1-like 732 875 - -
Lsi04g01433 882 Gene3D Histone deacetylase domain 335 661 IPR037138 -
Lsi04g01433 882 Gene3D - 693 882 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01433 K11418 HDAC11; histone deacetylase 11 [EC:3.5.1.98] - csv:101207492 624.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01433 Lsi-Chr4:22064089 Lsi07g00232 Lsi-Chr7:2573413 5.90E-65 dispersed
Lsi04g01433 Lsi-Chr4:22064089 Lsi07g01201 Lsi-Chr7:17506030 1.38E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g69 Blo01g01471 . Bda01g00614 . . Bpe02g00483 . Bma01g02218 . . Cma01g01741 . Car09g00280 . . . Cpe06g00236 . . . . . . . Cla05g01824 Cam05g1946 Cec05g1959 . Clacu05g1938 Cmu05g1819 . Cone4ag1655 Cone7ag1296 Cone17ag0922 Cone20ag0265 Lsi04g01433 . . . . . . . . . . . Sed13g1853 Cmo01g01771 Cmo09g00331 Cma09g00331 . Car01g01353 . . . Bhi09g03166 Tan01g4639 Cmetu07g0839 . Hepe01g1873 . . . . . . . . . . . . Cme07g00232
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01433 Lsi_Chr04 FPKM 0.422564 0.0 0.0 0.0 0.637394 1.133966 0.719604 0.288698 0.36447 0.317084