Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01437 ATGTCTGGCGGTGTTCTGCGACACGCGGCGACTGGTAACTTCCGTGTGCTGCGGCCGGAGAAAGACACAGAGGAGCGACAGAGTGCTGTGAGGGAGAGAAAAAAATCTGAGAAAGAGAGATCTGAGAGAGACGGAGGGATCTGCTTACCGGTGACCTGCGGCGGCGGCTGGAGCAAAACACGCAGGGGGGGAGAGATAAAGATTTATCGGTGGTGGTCGGCGGCGGCTAGGCGTCGGAGAAGGCGGAGAAACAGCGTGTGGTTGCTAGGCGAGAGAGATAAGGAGAGCGCTAAAGCAGCGGCGGAAGTTTCCAAAAATCGACGCCGAAGAACCATGGAAGCAATCGAAGTTGAGAGAGGAGGAAGCGGATACTCACTGAAACCATCGAGATTAAACAACGAAGACATTCTCTTCTGCATAGATGTGAACCCTGAATCTTCCGTTGAGATCAAAACCACCGGCTCTAATGGACGACCCATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCCGCCATCTGGCTAAAAAAAGAGTTTAGCAGTGATATTGCATCTGTGGAGGCTGCAGTCAGGGGACTTGCTACTTCCCCTTGCAATCATGCTGATCTTACCAGTCTTTTCCGATTAGCTGCTCATGAAGCAAGAAAGTCAACTGCCCAGAATCGTATTCTAAGAGTGATTCTTATTTATTGCAGATCGTCGACACGACCCCAACATCAATGGCCTGCGAACCAAAAACTCTTCACTTTAGATGTTATATACCTCCATGAGAAGCCCGGACCTGACAACTGCCCACAGGAGGTGTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTACGAAGGCTACATTTTCGAGAGTGGCCAGGGAGTGGCACGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCGCAGCAGCGAATATCACTAGATGATCTTGACATACCCAAGCCTCTTACAAAGAAATTGCCTCCTGCTGATTCCACCCCTGCAAACGAGATTCTCCATGAAACTAACAAAGTCGGAAGTGCTTTTGAAGAAGATTATAAATCTTATTCTGTCCATGGGATTCAGAAACCGGAATCCATTTGCTCCAAACAAGGGAGCAAAGGACTCAACCAAGATGCTGCCTTTTTCTATCAAGAATATGGAGAAGTAGAAGGGAGTTATTTGTTTGGAGTGTTTGATGGGCATGGACAAAATGGTCATATTGTGAGCAATATGGTAAGAAATAGATTACCTTCACTGATAAGTGTTGAGACAAAGAGTTTGAATTTATGGAAAGAAGCTTTGGAGACTTCCTTCAAGGTCATGGATAAGGAGATCAAACTACAAGAGAATTTGGATTGCTCGTGTAGCGGATCGACAGCGGTGGTGGTCGTCAAACAGGGAGATGGTTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGAAGAAGGGAGGATGATGGAATTGAAGGAATTCAATTAACGACAGATTTGAAGCCTGGGTTGGAAAGTGAAGGGGAGAGGATAAGGAAATGCAAAGGGAGAGTGTTGGCGCTGAAAGAAGAGGCGCATATACACAGAGTGTGGCTGCCAAATGAAGACGCGCCGGGGCTGGCTATGTCTAGAGCTTTTGGAGATTTTGCGCTTAAAGATTATGGCGTTATTGCTCTCCCTGATGTTTCCTTCCATCCTCTTGCTTCTCACGATCGTTTTATTGTTCTCGCTACTGATGGGATATGGGACGTGCTGAGCAACGATCAAGTAGCGTCCATCGTGTGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCAGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCGTTTGCCATTTTTTCCAAACCCAAAACGCCACTGATGACTGA 1998 48.5 MSGGVLRHAATGNFRVLRPEKDTEERQSAVRERKKSEKERSERDGGICLPVTCGGGWSKTRRGGEIKIYRWWSAAARRRRRRRNSVWLLGERDKESAKAAAEVSKNRRRRTMEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASVEAAVRGLATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRSSTRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEILHETNKVGSAFEEDYKSYSVHGIQKPESICSKQGSKGLNQDAAFFYQEYGEVEGSYLFGVFDGHGQNGHIVSNMVRNRLPSLISVETKSLNLWKEALETSFKVMDKEIKLQENLDCSCSGSTAVVVVKQGDGLVIGNLGDSRAVMGRRREDDGIEGIQLTTDLKPGLESEGERIRKCKGRVLALKEEAHIHRVWLPNEDAPGLAMSRAFGDFALKDYGVIALPDVSFHPLASHDRFIVLATDGIWDVLSNDQVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVVCHFFQTQNATDD 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22091024 22101481 + Lsi04G014370.1 Lsi04g01437 661486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01437 665 SUPERFAMILY vWA-like 136 252 IPR036465 -
Lsi04g01437 665 Gene3D - 377 660 IPR036457 -
Lsi04g01437 665 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 379 661 - -
Lsi04g01437 665 SMART PP2C_4 371 655 IPR001932 -
Lsi04g01437 665 MobiDBLite consensus disorder prediction 1 45 - -
Lsi04g01437 665 MobiDBLite consensus disorder prediction 14 45 - -
Lsi04g01437 665 Pfam Protein phosphatase 2C 395 635 IPR001932 -
Lsi04g01437 665 PANTHER ALPHABET, ISOFORM E-RELATED 379 661 - -
Lsi04g01437 665 CDD vWFA 135 252 - -
Lsi04g01437 665 CDD PP2Cc 389 654 IPR001932 -
Lsi04g01437 665 Gene3D von Willebrand factor, type A domain 136 273 IPR036465 -
Lsi04g01437 665 ProSitePatterns PPM-type phosphatase domain signature. 418 426 IPR000222 GO:0043169
Lsi04g01437 665 SUPERFAMILY PP2C-like 388 658 IPR036457 -
Lsi04g01437 665 ProSiteProfiles PPM-type phosphatase domain profile. 387 657 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01437 Lsi-Chr4:22091024 Lsi11g00963 Lsi-Chr11:15029915 3.81E-91 dispersed
Lsi05g01472 Lsi-Chr5:22555534 Lsi04g01437 Lsi-Chr4:22091024 4.36E-27 dispersed
Lsi09g01376 Lsi-Chr9:21780871 Lsi04g01437 Lsi-Chr4:22091024 1.47E-28 dispersed
Lsi04g01437 Lsi-Chr4:22091024 Lsi10g00876 Lsi-Chr10:12985503 8.83E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01437 K20776 - csv:101206375 482.256