Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01438 ATGGAAAGGGATCCCTTGAGAAACACTAACAATAATAGCAACGGCACCGCTAATAACAAAGTGGACACATCGGGGAGAAGCGGAGCCGAAGCGTCATCGTTGCTACTGAGATCCAATTGCGATGCTACAAGACAGACCGCACCATCGGATTTTGTTTTGCAGTGGGGAAACCGGAAGCGACTTAGATGTATGAAGGTCCAAGGCAGAGACAAAACTGACCCCGCCACTCCGGCTCACCGTACCACCGCCCGAGTCGACCGCCGAGTCGTTAGAACCGATAAAGACTCCCCCAACCGGACCGCCATCACTCATTCTCCTGCCAATCACAATAATATCAGTAATAATGGATATTTGAATCTCCGCCAACGACCCTCATCCCCTCAGCTCCCCCCTCCTCACCACCGCATTCTCAGGAACTCGGAGACGGCGGGAGCGATGAGAGGGCACGGCAACGGCGGTGTTAGGGGAATTACCTCGCCGGACAGAGTGGCGCACGATAGAAGAGGAAGCAATAACCACCACCATCACTCCAACAACAACCATCATCATCACAATGACAATAATAACAACAAATCAGCGGCCACGTCGGACACGGCGCACGATAGTAAAAAGGGTGGTTCTTCATCCGGTGGCAGTGGGGAGGCTGCTCTACCCCAAGTATGGCCGCCAAAATTCGCTATTGCTTTGACGAACAAAGAGAAAGAAGAGGATTTCTTAGCCATCAAAGGCTCTAAGTTGCCTCAAAGACCCAAGAAACGAGCCAAGATTATCCAACGCACCGTCAACCTGGTGAGTCCGGGGTCATGGCTATCTGATCTGACTCTCGAGCGGTATGAAGTTCGGGAGAAGAAGATTTCTAAGAAGAGACCGAGAGGATTGAAGGCAATGGGTAACATGGAGTCGGATTCGGAGTGA 915 51.69 MERDPLRNTNNNSNGTANNKVDTSGRSGAEASSLLLRSNCDATRQTAPSDFVLQWGNRKRLRCMKVQGRDKTDPATPAHRTTARVDRRVVRTDKDSPNRTAITHSPANHNNISNNGYLNLRQRPSSPQLPPPHHRILRNSETAGAMRGHGNGGVRGITSPDRVAHDRRGSNNHHHHSNNNHHHHNDNNNNKSAATSDTAHDSKKGGSSSGGSGEAALPQVWPPKFAIALTNKEKEEDFLAIKGSKLPQRPKKRAKIIQRTVNLVSPGSWLSDLTLERYEVREKKISKKRPRGLKAMGNMESDSE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22109527 22114602 + Lsi04G014380.1 Lsi04g01438 661487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01438 304 MobiDBLite consensus disorder prediction 99 124 - -
Lsi04g01438 304 PANTHER PUTATIVE (DUF1639)-RELATED 1 304 - -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 67 218 - -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 7 27 - -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 285 304 - -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 1 27 - -
Lsi04g01438 304 PANTHER INTEGRATOR COMPLEX SUBUNIT 6 HOMOLOG 1 304 - -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 67 98 - -
Lsi04g01438 304 Pfam Protein of unknown function (DUF1639) 229 278 IPR012438 -
Lsi04g01438 304 MobiDBLite consensus disorder prediction 189 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01438 - - - mcha:111011045 474.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01438 Lsi08g01570 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01438 Lsi-Chr4:22109527 Lsi09g00447 Lsi-Chr9:4727440 4.09E-08 dispersed
Lsi03g01302 Lsi-Chr3:23861413 Lsi04g01438 Lsi-Chr4:22109527 3.96E-38 transposed
Lsi06g00399 Lsi-Chr6:4403303 Lsi04g01438 Lsi-Chr4:22109527 1.48E-31 transposed
Lsi08g01571 Lsi-Chr8:23737151 Lsi04g01438 Lsi-Chr4:22109527 2.29E-31 transposed
Lsi04g01438 Lsi-Chr4:22109527 Lsi08g01570 Lsi-Chr8:23734336 4.35E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g52 Blo01g01476 Blo12g01007 Bda01g00610 Bda03g00150 . . . Bma01g02222 Cmo05g00112 Cmo12g00568 Cma01g01748 Cma05g00106 Car09g00277 Car12g00575 Sed08g1756 Cpe07g00548 Cpe06g00233 Bhi04g00489 Tan02g1657 Cmetu03g1033 . Hepe08g1378 . Lcy13g2173 Cla05g01816 Cam05g1940 Cec05g1953 . Clacu05g1932 Cmu05g1813 Cre05g1939 Cone4ag1648 . Cone17ag0915 Cone20ag0257 Lsi04g01438 . . . . . . . . Bpe04g00133 . . Sed11g1844 Cmo01g01761 Cmo09g00326 Cma09g00328 Cma12g00627 Car01g01360 Car05g00092 Cpe11g00086 Cpe02g00250 Bhi09g03175 Tan01g4647 Cmetu07g1833 . . . . . . . . . . . Lsi08g01570 Csa02g01850 Chy03g01633 Cme07g00240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002182 2 3 1 1 1 2 3 1 2 2 2 1 3 2 2 3 1 3 3 2 2 2 2 2 2 3 2 6 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01438 Lsi_Chr04 FPKM 8.718146 8.563391 42.607944 39.765144 2.209247 1.767115 1.298756 29.611135 29.991955 25.660641