Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01440 ATGCAATCGAAAGTTCTCCCACTGGAGGAAGGGAAAGACCCTGGACCTATGAACAGAACCAACCAAGCTAGGCCGTTGCCTTTTAGATTACTTCAGTTATTCGTGTTGTTTTTGGTTCTTTGCGTTGCTTTTTCGGTTGTTAGTTTGTATACGATCCGTCATTTTGGGATTGATAGCGCAGTGATGACGGTTAAGTCTAATTTCCTTCCCTGTTTGGAGGAATCCAATATTAGTTTGGGTCGGTGGATTAAGGCTCCGGTGGATTTGATGCACTCAATGACCGACGAGGAGTTGTTTTGGAGAGCATCGTTTTCACCTCACATTAAGAATTACCCTTTTGAAAGGGTTCCGAAAATTGCTTTTATGTTCTTGACTAAAGGTCCATTGCCACTTGCCCCACTTTGGGAGAGATTTCTGAACGGACATCAAACCCTCTTTTCAGTTTACATTCACTCTCTGCCATCGTTCAAACCCAATTTTACTCATGCTTCTGTGTTTCATGGGAGACAAATTCCTAGCCAGGTTGCAGAGTGGGGAAGAATGAGTATATGTGATGCGGAGAAAAGACTCCTAGCCAATGCACTGCTCGACATCAACAACGAATGGTTCATTCTCCTCTCGGAATCATGCATTCCTCTCTACAATTTCAGTGTGATATACAACTACTTGAAGGAATCCAAATATAGCTTTGTGGGTTCGTTTGACGACCTTGGCCCTTTCGGGAGAGGACGATATAGGGATGACATGGCACCAGAGGTAAACATCACAGAATGGCGTAAAGGCTCCCAATGGTTTGAAGTGAACCGTAAGCTTGCAATCAACATAGTGCAAGACACCAAATATTATCAGAAATTCGAACAATTCTGTCGACCACCATGCTACGTAGACGAGCATTATTTCCCGACAATGCTCACGATAGAATCTGGAGACATTGTAGCCAACAGAAGCCTCACATGGGTGGACTGGTCAAGAGGAGGCCCTCACCCTGCGACGTTCGGAAGACGGGACATTACAGAAGAATTGTTAACAAGAATTGTAGACGGTCAGAACTGCAGTTACAACGATGGGACCTCCTCCATTTGTTCTCTGTTTGCAAGAAAATTCGCACCAAGTACGTTGCAGCCTTTGCTACGTTTAGCATTGGACGTGTTCGGATATTGA 1161 44.44 MQSKVLPLEEGKDPGPMNRTNQARPLPFRLLQLFVLFLVLCVAFSVVSLYTIRHFGIDSAVMTVKSNFLPCLEESNISLGRWIKAPVDLMHSMTDEELFWRASFSPHIKNYPFERVPKIAFMFLTKGPLPLAPLWERFLNGHQTLFSVYIHSLPSFKPNFTHASVFHGRQIPSQVAEWGRMSICDAEKRLLANALLDINNEWFILLSESCIPLYNFSVIYNYLKESKYSFVGSFDDLGPFGRGRYRDDMAPEVNITEWRKGSQWFEVNRKLAINIVQDTKYYQKFEQFCRPPCYVDEHYFPTMLTIESGDIVANRSLTWVDWSRGGPHPATFGRRDITEELLTRIVDGQNCSYNDGTSSICSLFARKFAPSTLQPLLRLALDVFGY 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22129623 22132846 - Lsi04G014400.1 Lsi04g01440 661489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01440 386 PANTHER - 4 383 - -
Lsi04g01440 386 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 4 383 IPR044174 GO:0016757
Lsi04g01440 386 Pfam Core-2/I-Branching enzyme 119 345 IPR003406 GO:0016020|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01440 - - - csv:101205668 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00190 Lsi-Chr2:1612454 Lsi04g01440 Lsi-Chr4:22129623 1.20E-101 dispersed
Lsi04g01440 Lsi-Chr4:22129623 Lsi07g00551 Lsi-Chr7:5846349 1.07E-179 dispersed
Lsi05g00720 Lsi-Chr5:9816579 Lsi04g01440 Lsi-Chr4:22129623 8.34E-120 transposed
Lsi02g02957 Lsi-Chr2:35692704 Lsi04g01440 Lsi-Chr4:22129623 2.08E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g51 . Blo12g01006 . Bda03g00151 . Bpe02g00478 . Bma01g02224 . . Cma01g01750 . Car09g00275 . . . Cpe06g00231 . . . . . . . Cla05g01814 Cam05g1938 Cec05g1951 Cco05g2012 Clacu05g1930 Cmu05g1812 Cre05g1938 Cone4ag1647 . . . Lsi04g01440 . . . . . Bda01g00970 . . Bpe04g00134 . . Sed11g1846 Cmo01g01759 Cmo09g00325 Cma09g00327 . Car01g01361 . . Cpe02g00248 Bhi09g03176 Tan01g4649 Cmetu07g0345 . Hepe01g1863 Mch11g0398 . . . . . . . . . . . Cme07g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007702 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01440 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0