Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01443 | ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATATGACCGGAATTTCCTCGCCGGTCTTCATCGCTGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTACCTTCCCTCTGCGGCGGATTCCGACGATTTGAATGCGGTGGCTGAGGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACAGAGTGTCCGTACGCTCATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGTATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGGGATTCTTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCTTGTAAGGATGGACTGGCCTGTCGCCGCCGTGTTTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTCTGCCACAACAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGGTCCTCACGAATTGCACACGCATTCGATTCCTATTTTGGCAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCTCCTGTCTCTCCGCCGTCCGATTCACCTCCCTTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCGTGTATGCGTAATCTTCAAATTGAGAAATTGAAAGCAACTCCTCATTGGGGGAGGATTCAATTGGGGCAGAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAGCTTACCGTCAACTCCGACCACCGGAACGTACGAATTATGGGGGAAAAATTACGAGGAAGAACCGGCAATGGAGAGAGTGGAATCTGGGAGAGACCTAAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTGAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTGA | 1050 | 51.43 | MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFIAGGVDSFIDSFSAIHRYLPSAADSDDLNAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRIAHAFDSYFGKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIEKLKATPHWGRIQLGQNPLSPSGSGFFSLPSTPTTGTYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22158906 | 22159955 | - | Lsi04G014430.1 | Lsi04g01443 | 661492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01443 | 349 | SMART | c3hfinal6 | 116 | 142 | IPR000571 | GO:0046872 | |
Lsi04g01443 | 349 | SMART | c3hfinal6 | 151 | 174 | IPR000571 | GO:0046872 | |
Lsi04g01443 | 349 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 348 | - | - | |
Lsi04g01443 | 349 | ProSiteProfiles | Zinc finger C3H1-type profile. | 117 | 143 | IPR000571 | GO:0046872 | |
Lsi04g01443 | 349 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 348 | IPR045234 | - | |
Lsi04g01443 | 349 | Gene3D | - | 112 | 185 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01443 | Lsi08g01560 | CCT | |
Lsi04g01443 | Lsi08g01560 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01443 | Lsi-Chr4:22158906 | Lsi11g00204 | Lsi-Chr11:2077559 | 1.83E-102 | dispersed | |
Lsi04g01443 | Lsi-Chr4:22158906 | Lsi06g00248 | Lsi-Chr6:2788692 | 9.52E-120 | wgd | |
Lsi04g01443 | Lsi-Chr4:22158906 | Lsi08g01560 | Lsi-Chr8:23679943 | 1.20E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25197 | None | None | None | None | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01443 | - | - | csv:101205433 | 676.011 |