Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01443 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATATGACCGGAATTTCCTCGCCGGTCTTCATCGCTGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTACCTTCCCTCTGCGGCGGATTCCGACGATTTGAATGCGGTGGCTGAGGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACAGAGTGTCCGTACGCTCATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGTATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGGGATTCTTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCTTGTAAGGATGGACTGGCCTGTCGCCGCCGTGTTTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTCTGCCACAACAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGGTCCTCACGAATTGCACACGCATTCGATTCCTATTTTGGCAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCTCCTGTCTCTCCGCCGTCCGATTCACCTCCCTTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCGTGTATGCGTAATCTTCAAATTGAGAAATTGAAAGCAACTCCTCATTGGGGGAGGATTCAATTGGGGCAGAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAGCTTACCGTCAACTCCGACCACCGGAACGTACGAATTATGGGGGAAAAATTACGAGGAAGAACCGGCAATGGAGAGAGTGGAATCTGGGAGAGACCTAAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTGAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTGA 1050 51.43 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFIAGGVDSFIDSFSAIHRYLPSAADSDDLNAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRIAHAFDSYFGKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIEKLKATPHWGRIQLGQNPLSPSGSGFFSLPSTPTTGTYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22158906 22159955 - Lsi04G014430.1 Lsi04g01443 661492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01443 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Lsi04g01443 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Lsi04g01443 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 348 - -
Lsi04g01443 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Lsi04g01443 349 PANTHER UNKEMPT FAMILY MEMBER 8 348 IPR045234 -
Lsi04g01443 349 Gene3D - 112 185 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01443 Lsi08g01560 CCT
Lsi04g01443 Lsi08g01560 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01443 Lsi-Chr4:22158906 Lsi11g00204 Lsi-Chr11:2077559 1.83E-102 dispersed
Lsi04g01443 Lsi-Chr4:22158906 Lsi06g00248 Lsi-Chr6:2788692 9.52E-120 wgd
Lsi04g01443 Lsi-Chr4:22158906 Lsi08g01560 Lsi-Chr8:23679943 1.20E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25197 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01443 - - csv:101205433 676.011