Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01445 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCTAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACAAGGAACCGATCACTGTTTTCAAACAACTACTCATCAATCGCACCATCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCAGGAGCTCACCCGCCACCGACATGTCGTCCTGAACAAAACGCTGTCCTTGATCTTGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCACCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCCGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAAATACCACAAAGGATCCTGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTACCGGAGATTGATCCTCGTGCTGAAGATAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACTTAAGCAGTCTCAAGCAAGAGCTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCTTCAAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCCCTCTATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCGTGA 1065 45.35 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQQGTDHCFQTTTHQSHHPIVKTEATTSHHQLLKFHYPLIRPPPGAHPPPTCRPEQNAVLDLEAIKAKILAHPQYSTLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGNTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22203808 22208747 + Lsi04G014450.1 Lsi04g01445 661494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01445 354 Pfam ELK domain 251 272 IPR005539 GO:0003677
Lsi04g01445 354 Gene3D - 268 302 - -
Lsi04g01445 354 Pfam KNOX1 domain 108 150 IPR005540 GO:0003677|GO:0005634
Lsi04g01445 354 Gene3D - 303 323 - -
Lsi04g01445 354 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g01445 354 SMART ELK_2 167 187 IPR005539 GO:0003677
Lsi04g01445 354 SMART ELK_2 251 272 IPR005539 GO:0003677
Lsi04g01445 354 SMART KNOX2_2 158 209 IPR005541 GO:0003677|GO:0005634
Lsi04g01445 354 CDD homeodomain 283 320 IPR001356 GO:0003677
Lsi04g01445 354 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Lsi04g01445 354 SUPERFAMILY Homeodomain-like 272 332 IPR009057 -
Lsi04g01445 354 Pfam KNOX2 domain 163 208 IPR005541 GO:0003677|GO:0005634
Lsi04g01445 354 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 346 - -
Lsi04g01445 354 MobiDBLite consensus disorder prediction 219 247 - -
Lsi04g01445 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 346 - -
Lsi04g01445 354 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01445 Lsi08g01559 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00456 Lsi-Chr1:3790826 Lsi04g01445 Lsi-Chr4:22203808 3.34E-79 dispersed
Lsi04g01445 Lsi-Chr4:22203808 Lsi11g01422 Lsi-Chr11:22788484 1.07E-72 dispersed
Lsi04g01445 Lsi-Chr4:22203808 Lsi08g01559 Lsi-Chr8:23652588 4.66E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01445 - - csv:101213104 590.112