Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01445 | ATGGAGGAATATAATAATGAAGTAAACGAGAACTCTAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACAAGGAACCGATCACTGTTTTCAAACAACTACTCATCAATCGCACCATCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCAGGAGCTCACCCGCCACCGACATGTCGTCCTGAACAAAACGCTGTCCTTGATCTTGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCACCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCCGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAAATACCACAAAGGATCCTGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTACCGGAGATTGATCCTCGTGCTGAAGATAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACTTAAGCAGTCTCAAGCAAGAGCTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCTTCAAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCCCTCTATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCGTGA | 1065 | 45.35 | MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQQGTDHCFQTTTHQSHHPIVKTEATTSHHQLLKFHYPLIRPPPGAHPPPTCRPEQNAVLDLEAIKAKILAHPQYSTLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGNTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22203808 | 22208747 | + | Lsi04G014450.1 | Lsi04g01445 | 661494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01445 | 354 | Pfam | ELK domain | 251 | 272 | IPR005539 | GO:0003677 | |
Lsi04g01445 | 354 | Gene3D | - | 268 | 302 | - | - | |
Lsi04g01445 | 354 | Pfam | KNOX1 domain | 108 | 150 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi04g01445 | 354 | Gene3D | - | 303 | 323 | - | - | |
Lsi04g01445 | 354 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi04g01445 | 354 | SMART | ELK_2 | 167 | 187 | IPR005539 | GO:0003677 | |
Lsi04g01445 | 354 | SMART | ELK_2 | 251 | 272 | IPR005539 | GO:0003677 | |
Lsi04g01445 | 354 | SMART | KNOX2_2 | 158 | 209 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi04g01445 | 354 | CDD | homeodomain | 283 | 320 | IPR001356 | GO:0003677 | |
Lsi04g01445 | 354 | ProSiteProfiles | ELK domain profile. | 251 | 271 | IPR005539 | GO:0003677 | |
Lsi04g01445 | 354 | SUPERFAMILY | Homeodomain-like | 272 | 332 | IPR009057 | - | |
Lsi04g01445 | 354 | Pfam | KNOX2 domain | 163 | 208 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi04g01445 | 354 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 346 | - | - | |
Lsi04g01445 | 354 | MobiDBLite | consensus disorder prediction | 219 | 247 | - | - | |
Lsi04g01445 | 354 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 346 | - | - | |
Lsi04g01445 | 354 | SMART | KNOX1_2 | 107 | 151 | IPR005540 | GO:0003677|GO:0005634 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01445 | Lsi08g01559 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00456 | Lsi-Chr1:3790826 | Lsi04g01445 | Lsi-Chr4:22203808 | 3.34E-79 | dispersed | |
Lsi04g01445 | Lsi-Chr4:22203808 | Lsi11g01422 | Lsi-Chr11:22788484 | 1.07E-72 | dispersed | |
Lsi04g01445 | Lsi-Chr4:22203808 | Lsi08g01559 | Lsi-Chr8:23652588 | 4.66E-107 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01445 | - | - | csv:101213104 | 590.112 |