Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01446 ATGGATAGGGATTGTAATACGGGGCTTCTTCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCTGTGCGGTCGCTCGTACCACCACCGGAAGTAGCCGGTATGAAGAAGAAGCTGCAGGTTTTGAAATTTGATGATATTTTACCTTCTCTGACACTTGGATTGTCGATTGTTGTCGAGAAGAGCGGCGGTGAATCCGCCGCCACCGTCACGGATGAATTGATTCAGCAGGGCTGTTCGGGTAGTCCGGTGTCTTCGTTTTCAAACTCGTCGGGATTTAAAAGGGAGCGAGACGGCGGCGGCGGCGGTGAAGAGAAGGAAGCGGAGGCGGAGGTTTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAGACAGTTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGCTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCGCCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCTATTTGCGGCGGCGGAGGCGGTGGCGGAGGAGGAGGCGGTGATGCATCTCCGGTCAATACTTTCTCAATTGGGTCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 843 48.52 MDRDCNTGLLLGLGRVSGDDSVRSLVPPPEVAGMKKKLQVLKFDDILPSLTLGLSIVVEKSGGESAATVTDELIQQGCSGSPVSSFSNSSGFKRERDGGGGGEEKEAEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICGGGGGGGGGGGDASPVNTFSIGSKPHFLKFPFKHPSAAC 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22211213 22213380 - Lsi04G014460.1 Lsi04g01446 661495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01446 280 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Lsi04g01446 280 SMART HOX_1 123 185 IPR001356 GO:0003677
Lsi04g01446 280 MobiDBLite consensus disorder prediction 78 108 - -
Lsi04g01446 280 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Lsi04g01446 280 Pfam Homeobox associated leucine zipper 181 214 IPR003106 GO:0006355|GO:0043565
Lsi04g01446 280 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Lsi04g01446 280 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Lsi04g01446 280 Gene3D - 116 186 - -
Lsi04g01446 280 Coils Coil 180 217 - -
Lsi04g01446 280 CDD homeodomain 124 182 IPR001356 GO:0003677
Lsi04g01446 280 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Lsi04g01446 280 PANTHER - 54 280 - -
Lsi04g01446 280 MobiDBLite consensus disorder prediction 78 92 - -
Lsi04g01446 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 54 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01446 Lsi-Chr4:22211213 Lsi05g00810 Lsi-Chr5:12236738 2.53E-70 dispersed
Lsi01g00857 Lsi-Chr1:6862407 Lsi04g01446 Lsi-Chr4:22211213 4.60E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25198 PF00046 Homeodomain 3.30E-17 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01446 K09338 - csv:101212868 374.015