Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01452 ATGATGGGGTTCTCAAACGCCGACCCAAGTCTCTGGAGTGAAGCTCTCTCTTCTTATCCATCTCAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACAAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGCCGCGTCTCTTGGACTTCGTTTCATCATTGGATGAATCGCTCGTCAAATTGGCTTCTCAGAAGGCCTTCCAATGCCTTCCTGATATTTCCAAAGCCGTGTCTGAGCTTACGCCGCTCAAAGGCATTGGTCCGGCCACTGCCTCGGCGGTTCTAGCTGCCTACGCGCCGGATGTTGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGTCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTTGCAAAGAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAATTTTCACACCATCTGATGTAGAGAGGGCTTGGTGGAGTATAGCTATAGGGGAAAAGTTCAAAGGTTCACAAGCACAATTAGATCCCAAGAATGGAAGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGA 663 47.36 MMGFSNADPSLWSEALSSYPSQIEALGKPNLVSLDDFYRNELPLLLHKRNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGIGPATASAVLAAYAPDVAPFMSDEAMEASLGNSKDYSLKQYLSFAKKLQDKAKELSSEGQIFTPSDVERAWWSIAIGEKFKGSQAQLDPKNGSKTGTKRKRKTSK 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22278454 22280578 + Lsi04G014520.1 Lsi04g01452 661501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01452 220 Coils Coil 153 173 - -
Lsi04g01452 220 MobiDBLite consensus disorder prediction 198 220 - -
Lsi04g01452 220 PANTHER UNCHARACTERIZED 3 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01452 - - - csv:101204707 367.466
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g603 Blo01g01483 . . . Bpe02g00468 . . Bma01g02227 . . . Cma09g00314 . . . Cpe06g00222 . . . . . . . . . . . . . . . . . . . Lsi04g01452 Csa04g02508 . . . . . . . . . . Sed11g1868 . Cmo09g00314 . . . . . . Bhi09g03188 Tan01g4657 Cmetu07g0128 . . . . Cla05g01805 Cam05g1927 Cec05g1939 Cco05g2002 Clacu05g1919 Cmu05g1801 Cre05g1927 . . Chy07g00215 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010816 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01452 Lsi_Chr04 FPKM 40.955643 45.177376 17.567017 17.50415 12.352489 13.585573 12.615798 65.094681 62.31028 58.297249