Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01453 ATGACAATTCTCGTTTCCGCCGACCGCAAGTATCGGCGGAGCCCTAGAAAGCCCTTGCTCCCTGATAAATGCGACCACCAGGAGCGTGTTGAGGTAGGGTTAGATGGCGCATCGTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACCATTGTCGGCGCTGGAATCATGGCTCTCCCAGCCGCTGTGAAGCAATTAGGTCTAATTCCAGGCTTGGTCTTGATCATGCTCGGATCGACGTTGACGGAGTTGTCAATTGACTTCATCCTAAAATTCTCTCGAGCGTCCAAATCCGTTACGTACGCTGGCGCCGTCGGCGAATCTCTTGGCAGCGCCGGACGTACCCTTTTGCAGGTTTGCATCGTGGTCAATAACTTGGGTATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTTTCAGGAACATCGGCCAATAACATTCATCATAAGGGTGTAATGGAAGAATGGTTTGGTCAACATTGGTGGACCAGCCGCATATCCTTAATGCTGCTTACGACGCTTTTGATTTTTGCGCCTCTAATATCCTTCAAGCGTGTAGATTCCTTGAGATACACATCAGCTTTGTCAGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTAGCAATTGCCAAGCTGATGGATGGGAGTATTGGAATGCCACGTCTGATGCCTAAAGTTATTGATCAGGCATCATTTTGGCAACTTTTTACCACTGTTCCAATCCTAGTTACTGCTTATATCTGTCACCATAATGACCAAACGTTGGATGATGTACTTGCAAATTTTGATGGAGATCTTGGGCTTCCATACAGCTCATTGCTTGATGATGTTGTAAGGGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCCATTGTTTTTTTCTCCCTTCGCCTCAATGTTGATGGTCTGCTCTTTCCCTATGCCATACCTATTACTTTCGACAACCGACGATTCTTCTCAATAACTATAGCTCTCATGAGTTTCATCTTCATTGGAGCAAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACTGCTGCCATCTCTGTTGGGGACACTTGTGGGATTGCATCAAAGAAAGACAGAGTAATAGCATGGATAATGTTCCTATTAGCTGTTTTGTCAAGTATGGCCGCAATCTCATGCGATATCTACAGTTCTTACGTGATCGAGAATCACGCTTGA 1209 46.9 MTILVSADRKYRRSPRKPLLPDKCDHQERVEVGLDGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLVLIMLGSTLTELSIDFILKFSRASKSVTYAGAVGESLGSAGRTLLQVCIVVNNLGMLVVYMIIIGDVFSGTSANNIHHKGVMEEWFGQHWWTSRISLMLLTTLLIFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVAIAKLMDGSIGMPRLMPKVIDQASFWQLFTTVPILVTAYICHHNDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPITFDNRRFFSITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGDTCGIASKKDRVIAWIMFLLAVLSSMAAISCDIYSSYVIENHA 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22284542 22288959 + Lsi04G014530.1 Lsi04g01453 661502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01453 402 PANTHER AMINO ACID TRANSPORTER 255 393 - -
Lsi04g01453 402 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g01453 402 PANTHER AMINO ACID TRANSPORTER AVT6A 255 393 - -
Lsi04g01453 402 PANTHER AMINO ACID TRANSPORTER AVT6A 10 254 - -
Lsi04g01453 402 Pfam Transmembrane amino acid transporter protein 37 254 IPR013057 -
Lsi04g01453 402 PANTHER AMINO ACID TRANSPORTER 10 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01453 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01043 Lsi-Chr4:12252980 Lsi04g01453 Lsi-Chr4:22284542 7.60E-83 dispersed
Lsi04g01453 Lsi-Chr4:22284542 Lsi07g00974 Lsi-Chr7:12831885 1.53E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01611 . 55 438 Amino Acid/Auxin Permease AAAP Family AT2G41190 64.0 8.6e-134 474.2
Lsi07g00974 . 16 467 Amino Acid/Auxin Permease AAAP Family AT3G30390 65.9 2.7e-163 572.0
Lsi04g01453 . 18 396 Amino Acid/Auxin Permease AAAP Family AT3G30390 51.6 2.1e-115 412.9
Lsi03g01483 . 39 431 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.2 4.5e-133 471.5
Lsi07g00974 . 21 417 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.9 1.2e-155 546.6
Lsi04g01453 . 35 394 Amino Acid/Auxin Permease AAAP Family AT5G38820 51.3 1.3e-109 393.7
Lsi02g02690 . 1 490 Amino Acid/Auxin Permease AAAP Family AT1G80510 69.8 5.7e-183 637.5
Lsi04g00084 CCT,ECH 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.4 1.2e-177 619.8
Lsi08g00708 . 1 342 Amino Acid/Auxin Permease AAAP Family AT2G39130 56.3 3.0e-107 386.0
Lsi03g01483 . 95 430 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.8 8.0e-112 400.6
Lsi04g01044 . 10 428 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.2 1.1e-134 476.9
Lsi04g01043 . 49 517 Amino Acid/Auxin Permease AAAP Family AT3G56200 51.2 1.4e-119 426.8
Lsi04g00084 CCT,ECH 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 64.8 1.2e-162 570.1
Lsi08g00708 . 1 341 Amino Acid/Auxin Permease AAAP Family AT3G54830 52.5 7.7e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01453 Lsi_Chr04 FPKM 31.425171 25.296825 12.124498 11.86942 11.136047 15.449574 10.339519 33.729961 30.969097 33.145374