Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01454 ATGGCGCCCTCATTTGATTGGTGGGGAAAAGACAGTCATAGAGGAACCCCTGTTGTTGTCAAAATGGAGAATCCAAATTGGTCGATGGTTGAGCTGGAGGGTCCGTCGGAGGATGATTTTATCATCGCTGGTGAGTCGTCGCCGACGGGTCGGACCAGAGAGAAAGGCAGAGGGAAAAACGCTAAGCAACTTACGTGGGTCCTCCTCCTCAAGGCCCACAGGGCCGCTGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACCTCGCCGCCGCCGTTAGACGCCGCGTTGCTTCTGGAAGGACTGATGTGGACGACGCCGACAATGACGTCACTGTTGGAGGTAGAGAGAAAGAGAACCCGACTGTGAAAACGAGATTCTATTCTTGTATCAAGGTGTTTTTATGGCTGTCGGTGCTTCTGTTGGGTTTTGAGATTGCGGCTTTCTTCAAGGGCTGGCATTTTGGTACTCCAAAGCTTCAATTGGATTATCTCTGGGCATCGCCTTGGGGTTTCAAAGGAGCTTTTGGTTGGATTTATACTCAGTGGGTATTGATTCGAGTGGACTATTTAGCTCCACCTCTACAGTTCTTAGCCAATGCCTGTATCATACTGTTCATCATTCAGAGCTTGGATCGTTTAATCTTATGTTTGGGTTGTTTCTGGATCCGATTCAAAAAAATCCAACCAGTTCTTAAACCTGGAGATGAAGACCTTGAATCCGGTGAGAAGGGCTATTTCCCAATGGTTCTTGTTCAGATCCCCATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATCTGCAACTTGGACTGGCCAAGAACCAAGCTGCTGATTCAAGTTCTTGATGATTCTGATGATCCAACTACCCAGTTGCTGATTAAAGAGGAGGTTCTTAAGTGGCAGCAAGAGGGTGCCAACATTATTTATCGACATCGGGTCATTAGAGATGGTTACAAGGCTGGCAACCTCAAATCCGCCATGAATTGTAGCTATGTCAAAGACTACGAATTCGTTGCCATTTTCGATGCTGATTTTCAACCCACACCCGATTTCCTTAAAAGAACTGTTCCCCATTTCAAGAACACTGTTAACTCTATTTTCATTGGCACTCATCAGGACAATGAAGAGCTGGGGCTGGTTCAAGCAAGGTGGTCTTTTGTGAACAGGGATGAGAACTTGCTAACTAGGCTACAGAACGTCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACAGTGTCTTCCTTAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATCAAAGCTCTCGAGGACGCCGGTGGGTGGTTAGAAAGGACCACCGTCGAGGACATGGATATCGCTGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTAAATGATGTTGAGTGCCAGTGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGCCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTATTATTCGATCAAAGGTATTGCTGTTATATCGATTGTGCAATTGTTCTTTTGTCATAGAGTTTCTCTTAATCAAATTACTGATATGGTTGTTCTGTATAATTGATACAATGCAGATTAGTGTATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATACTGCCCTTTTATTCTTTCACACTTTTCTGCATAATTCTACCTATGACAATGTTCGTTCCCGAGGCCGAGCTACCCGCTTGGGTCGTTTGCTATATCCCAGCCACCATGTCATTTCTAAACATCTTGCCTGCCCCAAAATCCTTCCCTTTCATTGTCCCTTACCTCCTTTTTGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTCTTCCAGCTCGGTAGTGCCTACGAATGGGTTGTTACAAAGAAATCTGGCCGTTCCTCGGAGGGCGATCTTGTCTCCTTGGTAGAGAGAGAGCAAAAGCATCAGAGAGGAGCTTCGGCGCCCGACCTAGAAGAAATGAAAGAAGAAATTCAGAAGCACGAGAAGAAAGCTGCTTTGCGAAAGAAGCACAATAGAATATACACAAAAGAGCTCGCATTAGCTTTCCTCCTCCTAACCGCATCAGCACGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTGCTGTTCCAGGGGATCTCGTTCCTGCTGGTCGGTTTGGATTTGATCGGCGAACAGATAGGTTGA 2259 45.33 MAPSFDWWGKDSHRGTPVVVKMENPNWSMVELEGPSEDDFIIAGESSPTGRTREKGRGKNAKQLTWVLLLKAHRAAGCLTSIGSAMVDLAAAVRRRVASGRTDVDDADNDVTVGGREKENPTVKTRFYSCIKVFLWLSVLLLGFEIAAFFKGWHFGTPKLQLDYLWASPWGFKGAFGWIYTQWVLIRVDYLAPPLQFLANACIILFIIQSLDRLILCLGCFWIRFKKIQPVLKPGDEDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPRTKLLIQVLDDSDDPTTQLLIKEEVLKWQQEGANIIYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKNTVNSIFIGTHQDNEELGLVQARWSFVNRDENLLTRLQNVNLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKVLLLYRLCNCSFVIEFLLIKLLIWLFCIIDTMQISVWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEREQKHQRGASAPDLEEMKEEIQKHEKKAALRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22296233 22299540 + Lsi04G014540.1 Lsi04g01454 661503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01454 752 Coils Coil 679 699 - -
Lsi04g01454 752 Pfam Glycosyl transferase family group 2 342 562 IPR001173 -
Lsi04g01454 752 SUPERFAMILY Nucleotide-diphospho-sugar transferases 250 552 IPR029044 -
Lsi04g01454 752 PANTHER - 542 751 - -
Lsi04g01454 752 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 542 751 - -
Lsi04g01454 752 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 477 IPR029044 -
Lsi04g01454 752 PANTHER - 6 543 - -
Lsi04g01454 752 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 6 543 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01454 Lsi08g01551 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01454 Lsi-Chr4:22296233 Lsi10g01196 Lsi-Chr10:16230217 5.39E-126 dispersed
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
Lsi02g02134 Lsi-Chr2:27661481 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
Lsi04g02204 Lsi-Chr4:29073775 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
Lsi04g01454 Lsi-Chr4:22296233 Lsi08g01551 Lsi-Chr8:23560648 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01454 - - csv:101204215 1333.55