Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01455 | ATGGGTGATCTCGAAAATGATGAAATGGGTTTTAGAAATTCGAATGAAGGGTTAATGAATTGCCCATCAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCACTGGTTTCGTTAGGTCAAAGTGAGAATTTTGGAGCTGCTTCTTCAATGGTCTCTTCTCATGGCGAATTTTCTAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACGACACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGGGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGATATGTTTGGTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATCTAGAAATGGAGCAAAATTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAGAAATCTAATAATAGTGCAGAAGCTCCTAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATTAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATGTCGACATCGAGAGGATTTTATCCAAAGATATTTTCCATGCACGAGGCAGCAACGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCCGTTTCCCCAGTCCCTCCTCACCGGATGTTTCAGTTTCAAGGGACGATGTCGAATATGCCTACCACATCCACCCAATTTCCCCCTTTGCCTCAGACTATGTTAGAAAGCGATATTCAGAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCATTGATAATTTGGGACCAAATGGGCGGTTGAAACCAGAGCGTTAA | 1182 | 42.55 | MGDLENDEMGFRNSNEGLMNCPSTMAMGSFFGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNLEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLESDIQSLLQMGFDSGSAIDNLGPNGRLKPER | 393 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22304152 | 22308022 | - | Lsi04G014550.1 | Lsi04g01455 | 661504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01455 | 393 | SMART | finulus | 235 | 285 | IPR011598 | GO:0046983 | |
| Lsi04g01455 | 393 | CDD | bHLH_AtBPE_like | 219 | 304 | - | - | |
| Lsi04g01455 | 393 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 23 | 392 | IPR024097 | GO:0006355 | |
| Lsi04g01455 | 393 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 23 | 392 | - | - | |
| Lsi04g01455 | 393 | MobiDBLite | consensus disorder prediction | 179 | 209 | - | - | |
| Lsi04g01455 | 393 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 229 | 279 | IPR011598 | GO:0046983 | |
| Lsi04g01455 | 393 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
| Lsi04g01455 | 393 | Gene3D | - | 226 | 299 | IPR036638 | GO:0046983 | |
| Lsi04g01455 | 393 | Pfam | Helix-loop-helix DNA-binding domain | 232 | 280 | IPR011598 | GO:0046983 | |
| Lsi04g01455 | 393 | MobiDBLite | consensus disorder prediction | 152 | 239 | - | - | |
| Lsi04g01455 | 393 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 227 | 294 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01455 | Lsi08g01550 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01455 | Lsi-Chr4:22304152 | Lsi09g00778 | Lsi-Chr9:8827021 | 2.51E-53 | dispersed | |
| Lsi10g00371 | Lsi-Chr10:5721018 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.52E-18 | dispersed | |
| Lsi02g02133 | Lsi-Chr2:27636934 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.38E-47 | transposed | |
| Lsi02g02245 | Lsi-Chr2:28928685 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.69E-21 | transposed | |
| Lsi04g00328 | Lsi-Chr4:3368247 | Lsi04g01455 | Lsi-Chr4:22304152 | 3.02E-56 | transposed | |
| Lsi06g00191 | Lsi-Chr6:2074144 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.12E-22 | transposed | |
| Lsi06g01169 | Lsi-Chr6:21956891 | Lsi04g01455 | Lsi-Chr4:22304152 | 2.31E-22 | transposed | |
| Lsi11g00401 | Lsi-Chr11:4157224 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.50E-20 | transposed | |
| Lsi04g01455 | Lsi-Chr4:22304152 | Lsi08g01550 | Lsi-Chr8:23556410 | 2.00E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25200 | PF00010 | HLH | 4.00E-06 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01455 | - | - | csv:101203971 | 736.487 |