Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01456 ATGGTTATGGAAGTTACTTCTAAGTCTCAGCAACGTTCTCACTACCATCACCAAAGCCAGGCAACTTCGACAGTAGCTGTCTCTAGCACCATGTCAAATGGCTTCTTAGCTTCTCACCACTACAATGGAGATTTTCTTTCTCCCTTGTCTGTAATGCCACTCAAGTTAGATGGGTCGTCCCTTTGTATCATGGAATCAATGAGCACATCATCACAACCTCAAGAAATATTGCCAAATATCTCACCAAAACTGGAGGACTTTCTTGGTGGTGCAACTCATGGAGAAGAGGCCACAGCTCTAAGCTTAGACAGCATATACTACAATCAGAATGCTGATGCTGATTCAGAGAGACAACATTCTTTGAGTCTTTTTAAGCAACAAGAGCAACAACATATTCTTTTTCATTCTCAGCGATATTATTCTGGAATGTTCCAGTATGCTACTGAGGATCCTAACAAGGATTCTCATATTGCAACCTATTGTTCTGAAATTCGACAAGATATGGAGCAGCGGATCAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGCTTGTCCATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCAAACCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCCCTGGCCAGTCGAAAGCAGCCGGTCCATCGGAAATCGATCGACACGTTCGGACAAAGGACTTCACAGTACAGAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGAAGACAAGGTTAGCCATATTTTAGACAATGTTTTTGCCTCTTCATCAAATCTATGTTCTAACTTCAAACCATTTCCTTGTTGTTTGTCATGTTCAACTTCCTCATGGATGCTGTTTAATTCAATTGGGTGGACATCAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCAGTTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAACATGAACCGTCAAGAATATGTTGCACACCTAAGAAGGTGCTCGAAAGAAAAGCAGTGGATTCTCCAGAGGAGCTTCCATATACAGAGGAGTAACCAGGTGTGTGTTTATAAGATTCAATCAATGCTCTACACTACTTTTCTTTCTGCTAAATACTGTTTCATTTGGTTTACTAGAGATCAATCTTTTGAATGTTTTTTCAGACATCATCAGCATGGAAGATGGCAAGCTCGGATCGGAAGAGTCGCGGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGCGGTGCAAACGCCGTTACGAACTTCGTCACATCGAGGTACGATGTAGAAAGGATCATAGCAAGCGGTAGCCTCCTTTCAGGAGAGTTTGTGATACGAAACAAAGAACACAAACCAACCAACACCATCGAACGTAAAGAACCAAAACAGAACATCGCTAAAACCGACGACCCCTCAGAGATATCAAACAACTTAGATTGGAGGATGGTATTCAACGACAGCCTGCTGCTGGATCCAAGCGCAACAGTCGAATCCATAGACGAAAAGTCCATGACCTCAAGCGGTTACAAGAATCATGTGATCGGAGTCGTTGAAACCGAAAGTTGTAATCAGGTAATGGTGAATGATTCAAGCAAGTACAAGGCTCAATTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGTGCAGCTCAAGGAAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTGTTATTTGCAAGAGGCTCATTTGGAAGCAATGGAAGTAATTGGCTTCCATCACCCCAAATTTCTTTTCCTGTTTGGAATGACGCCTGA 1953 43.01 MVMEVTSKSQQRSHYHHQSQATSTVAVSSTMSNGFLASHHYNGDFLSPLSVMPLKLDGSSLCIMESMSTSSQPQEILPNISPKLEDFLGGATHGEEATALSLDSIYYNQNADADSERQHSLSLFKQQEQQHILFHSQRYYSGMFQYATEDPNKDSHIATYCSEIRQDMEQRINGCCFGGMNCQDLQPLSLSMSPGSQSSCVTAPNQISQPGPATMETKKRALASRKQPVHRKSIDTFGQRTSQYRGIDGLVDMRLICGTIVVRRKVKPGKEDKVSHILDNVFASSSNLCSNFKPFPCCLSCSTSSWMLFNSIGWTSVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFQLKNYQLQIEEMKNMNRQEYVAHLRRCSKEKQWILQRSFHIQRSNQVCVYKIQSMLYTTFLSAKYCFIWFTRDQSFECFFRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGANAVTNFVTSRYDVERIIASGSLLSGEFVIRNKEHKPTNTIERKEPKQNIAKTDDPSEISNNLDWRMVFNDSLLLDPSATVESIDEKSMTSSGYKNHVIGVVETESCNQVMVNDSSKYKAQFSNASSVVSSLCSSRKTSPDKSNASSSVLFARGSFGSNGSNWLPSPQISFPVWNDA 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22324688 22327683 - Lsi04G014560.1 Lsi04g01456 661505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01456 650 Gene3D AP2/ERF domain 428 482 IPR036955 GO:0003700|GO:0006355
Lsi04g01456 650 Gene3D AP2/ERF domain 270 351 IPR036955 GO:0003700|GO:0006355
Lsi04g01456 650 CDD AP2 317 349 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 ProSiteProfiles AP2/ERF domain profile. 423 481 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 SUPERFAMILY DNA-binding domain 429 482 IPR016177 GO:0003677
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 247 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 316 376 - -
Lsi04g01456 650 SUPERFAMILY DNA-binding domain 312 350 IPR016177 GO:0003677
Lsi04g01456 650 Pfam AP2 domain 429 473 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 316 376 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 428 619 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 35 247 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 428 619 - -
Lsi04g01456 650 CDD AP2 428 480 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 ProSiteProfiles AP2/ERF domain profile. 243 349 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 MobiDBLite consensus disorder prediction 1 22 - -
Lsi04g01456 650 SMART rav1_2 305 355 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 SMART rav1_2 423 487 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01456 K09285 OVM, ANT; AP2-like factor, ANT lineage - csv:101212143 807.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01456 Lsi08g01547 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01456 Lsi-Chr4:22324688 Lsi06g01180 Lsi-Chr6:22096693 3.91E-60 dispersed
Lsi01g00869 Lsi-Chr1:7000981 Lsi04g01456 Lsi-Chr4:22324688 3.59E-30 wgd
Lsi04g01456 Lsi-Chr4:22324688 Lsi08g01547 Lsi-Chr8:23533820 3.72E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g608 Blo01g01486 . Bda01g00600 Bda03g00160 . . . . Cmo05g00125 Cmo12g00550 . . Car01g01376 . Sed10g1152 . . Bhi04g00456 Tan02g1691 Cmetu03g0539 . Hepe08g1355 . Lcy13g2154 . . . . . . . . . . . Lsi04g01456 . . . . . . . . . . . . Cmo01g01825 Cmo09g00310 . Cma05g00122 Car05g00104 Car09g00261 Cpe11g00106 . Bhi09g03196 . . . . . . . . . . . . . Lsi08g01547 Csa02g01870 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000570 3 7 3 2 2 3 6 3 3 3 3 3 6 3 5 5 3 3 6 3 3 3 3 3 3 3 3 5 4 1 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25201 PF00847 AP2 1.10E-07 CL0081 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01456 Lsi_Chr04 FPKM 12.877551 9.88448 0.209064 0.197823 7.43121 5.885126 6.345436 0.0 0.0 0.0