Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01457 ATGAATATGAGTAATATTAGGATGGAAAACAACAACGATCAGTGTAGGGGCAGAAAGATTTTTGTTGGTGGCTTATCGGCTGAATTGACTGAGGATGAGTTTAAAAATTACTTTGAAAAGTTTGGTAAGATAACCGATGTAGTTGTGATGCATGATAGTGTAACCAACCGCCCTAGAGGATTTGGATTCATCACATTTGATTCTGTAGAATCTGTTGACTCTGTTCTGCAGAATAACTTTCATGAGCTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGAAACTACAATGTTGGTCATATTCCCAATGCTAGAACACAGGGAGGAAAAAGCCCTCTTCCTAATAGGAATGTTCCTTTCCCTTACCCGTATTATGGTTCTGGTTATACAATTTATCCTGGTTTTACACCTTTTCCTCATTATGGAGGACCTGGAGTTGATTTGTATGGTTCAAACTTTTATGGGAATTGGTTTCCCCCTAGCTTTGGTAACATGGCTTCGGACGGCGCATGGTATGCCCCAAATACTTTTGGTGTTGGGATGTTTCCTCCACCTTATAGAAATTCTCTGATCCCTCCATCATACTCAAGCAAGGGGATCTCAGATACAGGGACTGGAAATGGAATGGCAATAAGAAACGGGGAGATAAAGCAGAACACTTCTGGAAAACGAAGTATGTCAGCTGATGCACTGCCATTTCAGATCAAAGACAGAACTTGA 732 41.26 MNMSNIRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNVGHIPNARTQGGKSPLPNRNVPFPYPYYGSGYTIYPGFTPFPHYGGPGVDLYGSNFYGNWFPPSFGNMASDGAWYAPNTFGVGMFPPPYRNSLIPPSYSSKGISDTGTGNGMAIRNGEIKQNTSGKRSMSADALPFQIKDRT 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22334896 22335627 - Lsi04G014570.1 Lsi04g01457 661506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01457 243 SMART rrm1_1 19 91 IPR000504 GO:0003723
Lsi04g01457 243 MobiDBLite consensus disorder prediction 206 235 - -
Lsi04g01457 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Lsi04g01457 243 MobiDBLite consensus disorder prediction 206 231 - -
Lsi04g01457 243 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 7 232 - -
Lsi04g01457 243 Gene3D - 15 103 IPR012677 -
Lsi04g01457 243 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 7 232 - -
Lsi04g01457 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 95 IPR000504 GO:0003723
Lsi04g01457 243 SUPERFAMILY RNA-binding domain, RBD 16 108 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01457 K14411 MSI; RNA-binding protein Musashi - csv:101211898 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01457 Lsi-Chr4:22334896 Lsi05g01043 Lsi-Chr5:17955317 4.15E-31 dispersed
Lsi11g00102 Lsi-Chr11:1097873 Lsi04g01457 Lsi-Chr4:22334896 1.41E-07 dispersed
Lsi04g01457 Lsi-Chr4:22334896 Lsi10g00060 Lsi-Chr10:992150 4.90E-17 transposed
Lsi04g01457 Lsi-Chr4:22334896 Lsi05g00527 Lsi-Chr5:6601183 2.56E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01457 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.524796 0.208667 0.0