Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01466 ATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACGTCTTGCTCCTAGATTAGCTGCTCTCAGAATTGAGCTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTCTATTTTGTGCTCCTGCATTCAAGACTCAATAAGCATGATGCAGAGGTTTTATCTACTCCACAGGTAGCAGCAGCGAGATCAATGTGGATGCAGGAATTACAAAAGCAGACCAAGCCAGAGTCTTACTGGTGTAGTAGAAGAGACACTTTTGAATTAAAAGACAGCTCCGATGTGCTGCAGGAAGACAGTAGTCCCATGGCATTCCATGATACTCATTCTGGATCGACGCTGCCTTGGACATTTACATATGAGCCAAGCATGTCGTCTATGTCAAGCAATTATGAGACAGATAAATATCAGATAGAGAGTACTGAAACGCACTTCATTGATAAGTCTGTTATTGTCGAAAAACCTATAATTAAGAATGAGGATAGAAACTCGACAACTGGGTCTTCTTCAAAATTCCTTGTTCAGAACTATGAGGATGAGTCAGACAATGACTGGCTAGAGGAAGACTCTGAGTTGGGTGGTTGTAATGGGACCATCCTCCCTCTGGAGAACGAAGAAGATATTTCTTTCAGTGATCTTGATGATGATGATATGGTTCTGCCGGCTAAATTCAAGATTGCTTCAAAAGAATAG 699 41.49 MSDAQKEHAFTIERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKHDAEVLSTPQVAAARSMWMQELQKQTKPESYWCSRRDTFELKDSSDVLQEDSSPMAFHDTHSGSTLPWTFTYEPSMSSMSSNYETDKYQIESTETHFIDKSVIVEKPIIKNEDRNSTTGSSSKFLVQNYEDESDNDWLEEDSELGGCNGTILPLENEEDISFSDLDDDDMVLPAKFKIASKE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22384634 22388878 - Lsi04G014660.1 Lsi04g01466 661515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01466 232 Gene3D BSD domain 1 58 IPR035925 -
Lsi04g01466 232 SUPERFAMILY BSD domain-like 2 53 IPR035925 -
Lsi04g01466 232 Pfam BSD domain 3 52 IPR005607 -
Lsi04g01466 232 ProSiteProfiles BSD domain profile. 1 48 IPR005607 -
Lsi04g01466 232 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 232 - -
Lsi04g01466 232 SMART wurzfinal6 1 48 IPR005607 -
Lsi04g01466 232 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01466 - - - csv:101202841 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01466 Lsi-Chr4:22384634 Lsi06g01006 Lsi-Chr6:20121369 1.77E-14 dispersed
Lsi01g00877 Lsi-Chr1:7082361 Lsi04g01466 Lsi-Chr4:22384634 1.54E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01466 Lsi_Chr04 FPKM 2.683012 2.769567 8.925706 9.361634 6.378225 4.89715 5.856753 70.260155 70.225807 71.313011