Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01467 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGATGCCGATTCGGAGCTGAGTTTGGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGCGGTGGAGGCGGTGGGTTAATCTGCGAGGGTGGAATGACCGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAAAGCATAGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGCCATATTACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAGCACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGCCAAGTTGTAACTTCGAATACGGCAAAGAGCACTGTGGAAGATAACGGCGGGGTTGCTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACGCAGTTGGCTCTGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGAGACTAAAATCAACTGCACCAGATTGATTGAAACGCTGCTCGATGGGGATGATTGTGGAGCAGACACTGTCTCAAGTTTAAGTCTCTTGGTTGGGTTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGATTAAGGTTGCTAAAAGCTCTGTGCTCCCAGAAACCAGTGAAGAACTCTGTAGTGAGCATAGGGGCAATCCCACAGTTAATCGAAATTCTCCCGAATTTTGACCCCGAATGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTTGCCCCTGAGGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTACTTCTGGTGATTCAGAGCGGTTGCAACCCTGTTCTGAAACAACGCTCTGCCGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCACTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 47.55 MPMYQPSGRRRDADSELSLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGMTEKLDLKEIVEELESIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNSTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVTSNTAKSTVEDNGGVALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADTVSSLSLLVGLLRLIKEKKHPNGVLAGLRLLKALCSQKPVKNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATHFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22395626 22396990 - Lsi04G014670.1 Lsi04g01467 661516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01467 454 Gene3D - 145 453 IPR011989 -
Lsi04g01467 454 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Lsi04g01467 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Lsi04g01467 454 CDD RING-Ubox_PUB 75 117 IPR045210 -
Lsi04g01467 454 SUPERFAMILY ARM repeat 164 270 IPR016024 -
Lsi04g01467 454 PANTHER WDSAM1 PROTEIN 43 453 IPR045185 GO:0061630
Lsi04g01467 454 MobiDBLite consensus disorder prediction 1 22 - -
Lsi04g01467 454 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Lsi04g01467 454 SUPERFAMILY ARM repeat 243 437 IPR016024 -
Lsi04g01467 454 SUPERFAMILY RING/U-box 65 141 - -
Lsi04g01467 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Lsi04g01467 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 43 453 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01467 Lsi08g01540 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01467 Lsi-Chr4:22395626 Lsi05g00219 Lsi-Chr5:2970010 1.85E-42 dispersed
Lsi10g00025 Lsi-Chr10:424531 Lsi04g01467 Lsi-Chr4:22395626 4.59E-08 transposed
Lsi04g01467 Lsi-Chr4:22395626 Lsi08g01540 Lsi-Chr8:23426756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01467 - - csv:101223113 828.165