Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01471 ATGAAATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATTCGGAGATAGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCAATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTCAAATAATCTTGAACCCTTATTCTTGGACGAAGAAATCCAGTATAATATTTGTAGATTTGCCAGTGGGAACGGGATTTTCATATGCTAAAACTCCACAATCTCTTAAGACAGGAGATTTTAAATTTATATCTAATCCATTTTATGTGGGTGGAGATTCGTACTCTGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGCATGCTCCCTATGTAAACCTTCAGGGATATATATTGGGAAATCCAGTCACCCTTCGTGACACATATCAAAATTTTGCAATTCCTTTTGCTCATCGAATGACTCTTATTTCTGATGAATTATTCGAGTTATTGACCTCTAGTTGCAAGGGAGAATACATAAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAATACGTACCAAAAGTGTGTTTCAAATATCGAAAAATCAAATATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTATACAAGACCCCCAAAGTGCTTCTTGATCCCGAGCCAACACTTCCTTCTCTTGACTGTCCTACCTATAAATTCCTACTTTCATTTTATTGGGCGAACAATAATCAAGTTCGGAAAGCACTTCACGTAAGGGAGGGAAGCATTGGAGAATGGACAAGATGTAGGAATCGGCAAAACTACGACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTGAACCTTAGTTCTAAAGGTAACGTGCAACACAAACTGTGTTATAAAATGATTATTTTGAAATATTTTATATTCTTATTACTAATTTTGCTGACACAAATGCACAGTGGGGATCATGATATGATTGTATCCCATTTGGATACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTTGAGGATTGGAGACCCTGGTTTATTGTGGATCAAGTAGCTGGATATACAAAAAGTTATGCAAATAAGATGACATTTGCCACCATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGTAATATTTAGTAGATGGATAACTAGAGAATCCTTATAA 1275 36.08 MKYVGVGDLEEVQLFYYFVKSEGNSEIDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPQIILNPYSWTKKSSIIFVDLPVGTGFSYAKTPQSLKTGDFKFISNPFYVGGDSYSGIIIPVIAQEILEENKHAPYVNLQGYILGNPVTLRDTYQNFAIPFAHRMTLISDELFELLTSSCKGEYINIDPSNVDCLRHYNTYQKCVSNIEKSNILLPKCSFHSPKKQKDAFDRRSLYKTPKVLLDPEPTLPSLDCPTYKFLLSFYWANNNQVRKALHVREGSIGEWTRCRNRQNYDFDVESAFPYHVNLSSKGNVQHKLCYKMIILKYFIFLLLILLTQMHSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIVDQVAGYTKSYANKMTFATIKGGGHTAEYTQKECSVIFSRWITRESL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22436348 22444631 + Lsi04G014710.1 Lsi04g01471 661520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01471 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 70 82 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 100 125 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 83 93 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 392 405 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 Pfam Serine carboxypeptidase 3 420 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 422 IPR001563 GO:0004185|GO:0006508
Lsi04g01471 424 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 3 422 - -
Lsi04g01471 424 SUPERFAMILY alpha/beta-Hydrolases 3 420 IPR029058 -
Lsi04g01471 424 Gene3D alpha/beta hydrolase 2 424 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01471 Lsi-Chr4:22436348 Lsi04g01474 Lsi-Chr4:22477132 0 dispersed
Lsi04g01470 Lsi-Chr4:22426179 Lsi04g01471 Lsi-Chr4:22436348 1.89E-51 tandem
Lsi04g01471 Lsi-Chr4:22436348 Lsi04g01472 Lsi-Chr4:22448593 1.03E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01471 K16296 - csv:101207623 486.493