Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01473 ATGAAGAAAGTTGGGATTTTGATATTGGGAATGAACAGATACATAGGAGTGGGGAATTCAGAGGAATTTCAACTGTTTCATTATTTTATTAAATCTTATGGAAATCCCAAAACGGATCCTCTCATTTTGTGGCTCACTGGAGGCCCTCGTTGCTCTGCTCTCTCTGGAATCGCCTTCGAAAGTGGTCCGATAAATTTTGAGGGAGATCTTAACAATGGGAGCATACCTCAAATAATCTTGAACCCTTACTCATGGACAGAGGTAAGCAATAATTATTATTTTCTAACTTTTGGTATACTATATATAGATTTACCGGTTGGTACGGGTTTTTCATATGCTAAAACTTCAGAAGATCCTAAATCAGGAGATTATGATCAAGTTCGTCATTCCCTTCAATTTTTGAGAAAGTGGTTGATCGATCATCCAGAATTTATATCAAATCCATTCTATGTTGCTGGAGATTCTTACTCTGGCATGATTGTTCCAATTGTTGTTCAAGAAATTTTAGAAGGAAATTATAAACATATTGTTCCGTTTATAAATTTTCAGGTTAGTAGTTTGGATTCTTACACTTGTCTTGTCGGATACATATTAGGAAATCCTATCACTACTCCTCACTCAAATAAAAATTTTCAAATCCCATTTGCTCATAGTATGGCCCTCATCTCGAATGAATTGTTTGAGGTAAACATAAATTGCCAGGGAGAATATGTGAACATTGATCCAAACAATGTGGAGTGCTTAAGACATTATGAAATATTTAAAGAGGTTTGTAACAACATTTTATATGTGATTCTATGTACTTCTGTAGTTACGGACGGATGTATTTTATGGCCCAAATGTCCATCTTTAAAAGAACCAACTACGTCTGGTCGTAGATCTCTCTACAGCATTTCTGTTCGTCCTAGATGTCGTGTGTATGAATACTTACTTTCTTACTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACATGAGGGAAGCATTGGAGAATGGATCAGATGTCGTGACAAATATCATTACAATTTTGAGCTTAATAGTGTTTTTCCTTATCATGTGAACCTTAGTTCTAAAGGTTATCGATCACTAATCTATAGCGGAGATCATGATATGATAGTGTCGCATATGGAAACTCAAGCATGGATCAAATCTTTAAATTATTCCATAGTAGATGATTGGAGGCCATGGTTCATCGAGGATGAAGTTGCCGGATACACAAGAAGTTATGCAAATAAGATGACCTTTGCAACTATAAAAGATGTTCGTAACTCTGTACCTTAG 1290 35.66 MKKVGILILGMNRYIGVGNSEEFQLFHYFIKSYGNPKTDPLILWLTGGPRCSALSGIAFESGPINFEGDLNNGSIPQIILNPYSWTEVSNNYYFLTFGILYIDLPVGTGFSYAKTSEDPKSGDYDQVRHSLQFLRKWLIDHPEFISNPFYVAGDSYSGMIVPIVVQEILEGNYKHIVPFINFQVSSLDSYTCLVGYILGNPITTPHSNKNFQIPFAHSMALISNELFEVNINCQGEYVNIDPNNVECLRHYEIFKEVCNNILYVILCTSVVTDGCILWPKCPSLKEPTTSGRRSLYSISVRPRCRVYEYLLSYYWANNDQVRKALHIHEGSIGEWIRCRDKYHYNFELNSVFPYHVNLSSKGYRSLIYSGDHDMIVSHMETQAWIKSLNYSIVDDWRPWFIEDEVAGYTRSYANKMTFATIKDVRNSVP 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22459901 22463972 + Lsi04G014730.1 Lsi04g01473 661522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01473 429 SUPERFAMILY alpha/beta-Hydrolases 14 423 IPR029058 -
Lsi04g01473 429 Pfam Serine carboxypeptidase 14 423 IPR001563 GO:0004185|GO:0006508
Lsi04g01473 429 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 424 IPR001563 GO:0004185|GO:0006508
Lsi04g01473 429 Gene3D alpha/beta hydrolase 9 429 IPR029058 -
Lsi04g01473 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 416 429 IPR001563 GO:0004185|GO:0006508
Lsi04g01473 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 81 93 IPR001563 GO:0004185|GO:0006508
Lsi04g01473 429 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 162 IPR001563 GO:0004185|GO:0006508
Lsi04g01473 429 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 13 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01473 Lsi-Chr4:22459901 Lsi05g01083 Lsi-Chr5:18451627 5.78E-101 dispersed
Lsi06g00688 Lsi-Chr6:10864102 Lsi04g01473 Lsi-Chr4:22459901 1.93E-30 dispersed
Lsi04g01472 Lsi-Chr4:22448593 Lsi04g01473 Lsi-Chr4:22459901 0 tandem
Lsi04g01473 Lsi-Chr4:22459901 Lsi04g01474 Lsi-Chr4:22477132 2.97E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01473 K16296 - csv:101207623 610.912