Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01474 CCCTTGCAAATACTAAAATTTTCATTTCCTCCAGATGGCCATACTTGTTCTTCGCTTCTCTATTTCTCTCTTCTTCTTTTTCAAGTCCTCTATGCGGTGGTTGCTTTTGCCGGCTCTTCGTCGACGGTGAAGTTTCTTCCCGGATTTTCAGGTCCTCTCCCTTTCGTACTCGAAACTGGATACGTGGGAATTGGAGAAAAAGAAGAAGTGCAATTGTTTTACTATTTTGTAAAATCAGAAGGAAACCCTGAAAAAGATCCTCTCGTTTTGTGGCACACCGGGGGCCCCGGTTGCTCCGGTTTATCTGGACTCGCATTTGAAATTGGTCCTCTGAATTTCAAGGAACAGCAATACAATGGAAGTCTACCTCAACTAACTTTGAACCCCTTTTCATGGACCAAGGTCATCAAGTCTAGTATAATATTTCTAGATTTGCCTGTGGGTACTGGATTTTCGTATGGTAAAACTTCTGAAGCTCTTAAGACGGGAGATTTTAGTCAATGGTTGGTCAATTATCATCCAGAATTTATATCCAATCCATTCTATGTTGGTGGAGACTCATATGCTGGTCTTATTGTTCCTGTTGTTACTCATGAAATATTAGAAGGAAATAAACATGTTTTGCCATTAGTAAATCTTCAGGGATACATATTGGAAAATCCTGTCACTATTCGTAATTCATATACAAATTTTGCAATTCCTTTTGCTCATCGGATAACACTCATCTCTAATGAATTATTTGAGGAGAATTATATTGATATAGCTAACTATTATAGCTCGTGTGTACAGTCTTTAACGACTAGCTGCAAAAGAGAGTATGTGAACATCGATTCTACTAATGTGGAGTGCTTAAGACATTATGATACCTATGAAAAGAGTGTTTCAGAAATTTGCGAGGGGAATATTTTGTTGCCAAAATGTCCCTCAGCTTCTTGGAAATTACAAGATGTGTCTGCTCGAAGATCTCTCCATAAAACTCCCAAAGTACTTCATGATCTAAAGCCACCACTTCCAACTCTTGCCTGTCCTACGTATAAATATTTACTTTCTTACCATTGGGCTAACGACAATCGAGTTCGAAAAGTGCTTCACATCCGAAAGTTCTCTTCCTATTGTATTGAGTGGAGGATTTCTTTTCCTTATCATATCAACCTCAGCTCTAAAGGTTATCGATCTTTAATCTATAGTGGAGATCATGATATGGTGGTGTCTCATTTAGACATTCAAGCATGGATTAAATCTTTAAATTATTCTATTGTTGATGAATGGAGGCCATGGTTCATCATGGATCAAGTAGCCGGATACACAAGAATTTATGCAAATAAGATGACATTTGCAACAATAAAGGGTGGAGGGCACACAGCAGAATACACACAAAAAGAATGTAGCATAATTTTCAATAGATGGATAACTAATAAATCATTGTAA 1428 37.68 PLQILKFSFPPDGHTCSSLLYFSLLLFQVLYAVVAFAGSSSTVKFLPGFSGPLPFVLETGYVGIGEKEEVQLFYYFVKSEGNPEKDPLVLWHTGGPGCSGLSGLAFEIGPLNFKEQQYNGSLPQLTLNPFSWTKVIKSSIIFLDLPVGTGFSYGKTSEALKTGDFSQWLVNYHPEFISNPFYVGGDSYAGLIVPVVTHEILEGNKHVLPLVNLQGYILENPVTIRNSYTNFAIPFAHRITLISNELFEENYIDIANYYSSCVQSLTTSCKREYVNIDSTNVECLRHYDTYEKSVSEICEGNILLPKCPSASWKLQDVSARRSLHKTPKVLHDLKPPLPTLACPTYKYLLSYHWANDNRVRKVLHIRKFSSYCIEWRISFPYHINLSSKGYRSLIYSGDHDMVVSHLDIQAWIKSLNYSIVDEWRPWFIMDQVAGYTRIYANKMTFATIKGGGHTAEYTQKECSIIFNRWITNKSL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22477132 22482924 + Lsi04G014740.1 Lsi04g01474 661523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01474 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Lsi04g01474 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 443 456 IPR001563 GO:0004185|GO:0006508
Lsi04g01474 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Lsi04g01474 475 SUPERFAMILY alpha/beta-Hydrolases 43 473 IPR029058 -
Lsi04g01474 475 Pfam Serine carboxypeptidase 47 472 IPR001563 GO:0004185|GO:0006508
Lsi04g01474 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 473 IPR001563 GO:0004185|GO:0006508
Lsi04g01474 475 Gene3D alpha/beta hydrolase 49 475 IPR029058 -
Lsi04g01474 475 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 37 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00740 Lsi-Chr4:6857777 Lsi04g01474 Lsi-Chr4:22477132 3.21E-08 dispersed
Lsi04g01470 Lsi-Chr4:22426179 Lsi04g01474 Lsi-Chr4:22477132 8.65E-60 dispersed
Lsi04g01471 Lsi-Chr4:22436348 Lsi04g01474 Lsi-Chr4:22477132 0 dispersed
Lsi04g01472 Lsi-Chr4:22448593 Lsi04g01474 Lsi-Chr4:22477132 2.89E-151 dispersed
Lsi04g01474 Lsi-Chr4:22477132 Lsi05g01083 Lsi-Chr5:18451627 2.58E-80 dispersed
Lsi04g01473 Lsi-Chr4:22459901 Lsi04g01474 Lsi-Chr4:22477132 2.97E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01474 K16296 - csv:101207623 493.426