Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01477 ATGATCAAAACTCTCTCTCCTTTCACCTCCACCGAGAAGACGGCGGAGATTATGTCCAGATACCGCCCCATTGCCCCCAAGCCCCAATCTCCCTCTCCCTTCTCCACTGCCGATCACTCTCCCAACATTCCTCATTCTTCCTCCTCCTCCTCCTCCTCCTCTTTTCTTCGAAATGTATGGCCTCACTTACAAGCCAGACCTACTCGTACTCGTAAGAGAGCTCGTCCTCCTCCTATTTCTCCTCATGCCTTGAAACGATCCAGAACTACTCCGCCTCCTCCCAATTTCTCTCTCCATCACCCCTTTCCTACTGCTTCTTTACTTCCTCACCTTTCTCTTCCATTTGAAGATGCCTCTTCTAATTCTAATCTTGTCACACTTCCGCTTCTTCCGCCTTCCTCTGTTTCTCATCAAACCACTGCTGTCTCTGAGATTAATTTCATTAAGTCCTTTGATGAAGAGAAGGGGATTGAATTGAACGCTACTGCTGTTGTCTCTGAAATTCCACAAGAGAAGGATCTCTTGCAGCAACTTCAATGTCCGGTTTCCACTTGCAATGTCATAACACCGCACCCTGTTCGTCCTGTTGGCTCCAGCATTCGTGTTGGGTGTATCAACGAAGCTCAAAACCCTACCCACTCTAACAATATTCCACAGCCGCCCAAGAAGCCGGATGAAGTGGAAAAGGAGGTTGAATCCGAGGTGTTACCGGCGGTTATATCGGACTCGAATAACAGAGTGAGAATGGCGAATTCGGCTTACAAAGAGATGGTCGGCCAGCCAGAGTGCCTGTGGCTGGATTCCATGGTAACCGGAGATGAACGGCTCAAAGGGAGAAGAATCGGTGGCGAAGTGATGCTCCACCTCTCCGATGCGGCGGCGGTGCCTCATTCGTCAAATGGGTTTTCTTGTTGGGTGAGGATCGAATGGGGAAACGGTGATGATGGGAAGAAAAATTCCATCACCGCCTTTTGCGATGTCATCAAACTTTCTTGTGTGTCTCGAGACTACGTCTTCACGTGGAGGTTCCACACTCAAACAAGAGATAATCATAATAATAATGCTTCCAAACCCATTTGTATCAATGTTTGA 1092 48.26 MIKTLSPFTSTEKTAEIMSRYRPIAPKPQSPSPFSTADHSPNIPHSSSSSSSSSFLRNVWPHLQARPTRTRKRARPPPISPHALKRSRTTPPPPNFSLHHPFPTASLLPHLSLPFEDASSNSNLVTLPLLPPSSVSHQTTAVSEINFIKSFDEEKGIELNATAVVSEIPQEKDLLQQLQCPVSTCNVITPHPVRPVGSSIRVGCINEAQNPTHSNNIPQPPKKPDEVEKEVESEVLPAVISDSNNRVRMANSAYKEMVGQPECLWLDSMVTGDERLKGRRIGGEVMLHLSDAAAVPHSSNGFSCWVRIEWGNGDDGKKNSITAFCDVIKLSCVSRDYVFTWRFHTQTRDNHNNNASKPICINV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22507033 22508124 + Lsi04G014770.1 Lsi04g01477 661526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01477 363 MobiDBLite consensus disorder prediction 1 16 - -
Lsi04g01477 363 PANTHER OS07G0585700 PROTEIN 1 353 - -
Lsi04g01477 363 PANTHER VON WILLEBRAND FACTOR A DOMAIN PROTEIN 1 353 - -
Lsi04g01477 363 MobiDBLite consensus disorder prediction 31 59 - -
Lsi04g01477 363 MobiDBLite consensus disorder prediction 1 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01477 - - - bhj:120087282 582.408
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g640 . . . Bda03g00170 . Bpe04g00154 . . . . Cma01g01781 Cma09g00295 Car01g01389 . . Cpe06g00205 . . . . . . . . . . . . . . . . . Cone17ag0893 Cone20ag0238 Lsi04g01477 Csa04g02485 . . . . . . . . . . Sed01g2724 Cmo01g01839 Cmo09g00288 . . . Car09g00249 . Cpe02g00225 Bhi09g03222 Tan01g4684 Cmetu07g0433 . Hepe01g1835 Mch11g0368 . Cla05g02111 Cam05g2263 Cec05g2284 Cco05g2325 Clacu05g2260 Cmu05g2122 Cre05g2246 . . Chy07g00194 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008385 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01477 Lsi_Chr04 FPKM 0.196347 0.0 0.0 0.19959 0.0 0.258786 0.196902 0.0 0.0 0.0