Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01483 ATGGTGTTTGGGCAAGTTGTAATCGGCCCTCCTGGTTCAGGAAAGACTACCTATTGTAATGGCATGTCTCAGTTTTTGCAACTAATCGGAAGGAAGGTTGCTGTCATCAACTTGGATCCTGCTAATGACTCATTGCCCTATGAATGTGCTGTAAACATTGAGGATCTGATCAAGTTAAGTGATGTGATGATGGAACATTCTCTTGGTCCTAATGGAGGCTTGGTTTATTGCATGGATTATCTGGAGAAAAATATAGATTGGTTGCAAGCTAGATTGGCACCTCTTTTGAAAGTGCATTTAGTTGATGCTCATCTTTGCAGTGACCCTGGGAAGTATGTTAGTGCACTGCTGCTCTCTTTATCAACCATGTTGCATCTGGAGCTCCCACACGTTAATGTCTTATCTAAGATTGATTTAATTGAGAACTATGGAAGGCTAGCTTTTAATCTTGACTTCTATACGGATGTGCAAGACTTATCATACCTACAGCATCATCTTGACCAAGATCCTCGCTCTGCCAAGTACAGAAAGCTCACTAAGGAGCTTTGTGGTGTAATTGAAGATTTTGGTTTAGTCAATTTTACAACCTTAGATATCCAGGCAAGCAATTCCATCCTTACTTTTTGCGTATCAGTTGGTCTATCTGAGGGCTTACTGGTCAGATCCTTATTCACAGGATAA 681 40.82 MVFGQVVIGPPGSGKTTYCNGMSQFLQLIGRKVAVINLDPANDSLPYECAVNIEDLIKLSDVMMEHSLGPNGGLVYCMDYLEKNIDWLQARLAPLLKVHLVDAHLCSDPGKYVSALLLSLSTMLHLELPHVNVLSKIDLIENYGRLAFNLDFYTDVQDLSYLQHHLDQDPRSAKYRKLTKELCGVIEDFGLVNFTTLDIQASNSILTFCVSVGLSEGLLVRSLFTG 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22520280 22524025 + Lsi04G014830.1 Lsi04g01483 661532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01483 226 CDD GPN2 3 140 - -
Lsi04g01483 226 Gene3D - 1 93 IPR027417 -
Lsi04g01483 226 Gene3D - 94 216 IPR027417 -
Lsi04g01483 226 Pfam Conserved hypothetical ATP binding protein 7 92 IPR004130 -
Lsi04g01483 226 Pfam Conserved hypothetical ATP binding protein 95 208 IPR004130 -
Lsi04g01483 226 PANTHER GPN-LOOP GTPASE 2 95 213 IPR030231 -
Lsi04g01483 226 PANTHER GPN-LOOP GTPASE 2 1 95 IPR030231 -
Lsi04g01483 226 PANTHER XPA-BINDING PROTEIN 1-RELATED 95 213 IPR004130 -
Lsi04g01483 226 PANTHER XPA-BINDING PROTEIN 1-RELATED 1 95 IPR004130 -
Lsi04g01483 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 198 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01483 K24104 GPN; GPN-loop GTPase - csv:101222399 382.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02199 Lsi-Chr2:28452715 Lsi04g01483 Lsi-Chr4:22520280 3.57E-45 dispersed
Lsi04g01483 Lsi-Chr4:22520280 Lsi11g00901 Lsi-Chr11:12089289 1.44E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g644 . Blo12g00989 . Bda03g00171 . Bpe04g00155 Bma04g00143 . . . . Cma09g00293 . . . Cpe06g00203 . . . . . . . . . . . . . . . Cone4ag1619 Cone7ag1329 . . Lsi04g01483 Csa04g02482 . . . . . . . . . . Sed01g2722 . Cmo09g00286 . . . Car09g00247 . . Bhi09g03224 Tan01g4687 Cmetu07g0529 . Hepe01g1833 Mch11g0366 . Cla05g02109 Cam05g2261 Cec05g2282 Cco05g2322 Clacu05g2258 Cmu05g2120 Cre05g2244 . . Chy07g00192 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004077 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 9 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01483 Lsi_Chr04 FPKM 0.0 0.942661 0.832329 1.185191 2.932031 2.14666 2.741783 1.303907 1.387912 2.095618