Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01488 | ATGGAAAGTTATTTGAATGAGAATTTCGGTGACGTGAAGCCGAAGAACTCGTCGGAAGAAGCGCTTCAGAGATGGAGGCGGCTTTGCTGGCTGGTGAAGAATCGGAAACGGAGGTTTCGATTTACTGCCAATCTCTCTAAACGATTTGAGGCCGAAGCTATTAGACGCTCAAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCAGCGCTTCAGTTCATCAATGGGTTGGATTTGTCTCCCGATTACGTTGTGCCTGAAGAGGTCAGACAAGCAGGTTTTAAAATTTGTGCAGATGAAGCAGGCTCCATTGTTGACGGCCATGACGTAAAGAAGCTGAAGATTCACGGGGGTGCTGAGGGTATTGTAACTAAGCTCGCCACATCAACGGAGACAGGCATTCCTACTACAGACCATTTGATCAAGAAAAGAAAAGACATTTACGGAATTAACAAATTCACCGAAAGCCCACCTCGAGGATTTTGGCTTTTTGTATGGGAAGCTCTCCAGGATACGACTCTAATGATACTCGCTTTCTGTGCTGTTGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTGGCGAGTATCTTGCTTGTTGTATTTGTCACTGCCACCAGTGACTATAGGCAATCGCTTCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAAATTGCTGTTCAGGTTACCAGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTCATTTCGGGGTACTCTCTTCTGATAAATGAATCCAGTTTAACAGGTGAGAGCGAACCAGTTAACGTAAATTCTCAAAATCCTTTCCTCTTGTCCGGAACAAAGGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGAACCCAATGGGGAAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTCAATGGGGTGGCAACAATTATTGGTAAAATAGGCCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCAGTCGCAAGCTACAAGAAGGGTCTTACTTCAGCTGGTCCGGAGATGAAGCAAGGGAGGTTTTGGAATTCTTTGCTGTCGCCGTAACAATTGTTGTGGTTGCTGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTGAGTCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTAGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGTAGTGACAAAACTGGAACGTTGACAACTAACCACATGACCGTTGTGAAAGCCTGCATCTGCAGCAACGTAAAGGAAGTTAGCAATTCTAGCAAGTGTTCCGATTATCGTTCAGAGCTTCCCGATTCCGCTGTTGGTATTTTGCTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGCAAGAATGAGACACTTGGGACGCCCACCGAGTCTGCTCTTCTGGAATTCGGCCTTCTGCTTGGTGGGAATTTCCAAGAAGAACGACAGAAGTCCAAAATCGCGAGAGTCGAGCCCTTCAATTCTGTGAAGAAACGTATGGGGGTTGTTTTGGAGCTCCCAGCCGGTGGCTTCCGCGCGCACAGCAAAGGTGCCTCAGAGATCGTTTTAGCTTCATGTGACAAAGTTCTTGACTCGAACGGTGAGGCAGTTCCTCTCAATGGAGAGTCCAACAACTTTATGAAGGAAACTATCGAAGAATTTGCGGGTGAAGCTCTTCGAACTTTGTGCCTGGCTTACATGGACATTGAAGGCGAGTATAACTCTGAAAGTCCGATTCCCGCCAGTGGCTACACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCGGGAGTCAAGGAGTCCGTTGCAATTTGCAAGGCCGCGGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCCAAAGCAATTGCTAGGGAATGTGGGATCTTGACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAATTGAGTAAACTAGTACCAAAAATTCAGCTATTTCGCTGGGGCATCATGTACCCCTTAATTGACCAGGTCATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGAACCACTTTCCAAGAGGTCGTTGCAGTTACTGGGGATGGAACAAATGATGCTCCGGCACTCCACGAAGCAGATATTGGATTAGCCATGGGCATTGCTGGAACTGAGGTGGCAAAAGAGAGTGCTGATGTAATAATTCTTGACGACAACTTCTCTACGATTGCAACTGTTGCCAAATGGGGGCGTTCAGTCTACATAAATATCCAAAAGTTCGTCCAGTTTCAGCTAACGGTGAATGTGGTTGCACTTCTGGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTTTGGGTCAACATGATAATGGACACACTCGGAGCTCTTGCATTGGCAACTGAGCCACCTACTGATGACTTGATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATTAGTAATGTGATGTGGAGAAATATCTTAGGGCAATCATTATATCAGTTCGTAATAGTTTGGTATCTCCAGACAAGAGGACAGGCTCTTTTCCATCTTGATGGCCCGGACTCTGGATTAATACTGAATACACTGATTTTCAATGCATTCGTCTTCTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAAAAGATAAATGTGTTTGAAGGAATATTGAAGAACTACGTCTTTGTGGCAGTGCTCGCTTGCACTGTCCTTTTCCAGATCATAATCATTCAGTTCCTGGGAACATTTGCAAACACATATCCTTTAAACTCCCAGCAATGGTTTGTCACTGTGTTATTTGGATTCCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGTTGGATCAGACTGA | 3102 | 45.29 | MESYLNENFGDVKPKNSSEEALQRWRRLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVRQAGFKICADEAGSIVDGHDVKKLKIHGGAEGIVTKLATSTETGIPTTDHLIKKRKDIYGINKFTESPPRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFISGYSLLINESSLTGESEPVNVNSQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAREVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSNVKEVSNSSKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGKNETLGTPTESALLEFGLLLGGNFQEERQKSKIARVEPFNSVKKRMGVVLELPAGGFRAHSKGASEIVLASCDKVLDSNGEAVPLNGESNNFMKETIEEFAGEALRTLCLAYMDIEGEYNSESPIPASGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSKLVPKIQLFRWGIMYPLIDQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSLYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPIAAALKMIPVGSD | 1033 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22556570 | 22562176 | + | Lsi04G014880.1 | Lsi04g01488 | 661537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01488 | 1033 | Gene3D | - | 169 | 1028 | - | - | |
| Lsi04g01488 | 1033 | Gene3D | - | 451 | 814 | IPR023214 | - | |
| Lsi04g01488 | 1033 | Gene3D | - | 464 | 660 | IPR023299 | GO:0000166 | |
| Lsi04g01488 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 387 | 477 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Lsi04g01488 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 206 | 377 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Lsi04g01488 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 550 | 701 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Lsi04g01488 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 742 | 850 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Lsi04g01488 | 1033 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Lsi04g01488 | 1033 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1029 | IPR023298 | - | |
| Lsi04g01488 | 1033 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 665 | IPR023299 | GO:0000166 | |
| Lsi04g01488 | 1033 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 334 | IPR008250 | - | |
| Lsi04g01488 | 1033 | Pfam | haloacid dehalogenase-like hydrolase | 753 | 813 | - | - | |
| Lsi04g01488 | 1033 | Pfam | Cation transport ATPase (P-type) | 515 | 594 | - | - | |
| Lsi04g01488 | 1033 | SUPERFAMILY | HAD-like | 452 | 874 | IPR036412 | - | |
| Lsi04g01488 | 1033 | SFLD | p-type atpase | 436 | 821 | IPR044492 | - | |
| Lsi04g01488 | 1033 | Gene3D | - | 142 | 337 | - | - | |
| Lsi04g01488 | 1033 | SFLD | Haloacid Dehalogenase | 436 | 821 | - | - | |
| Lsi04g01488 | 1033 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 108 | 1030 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Lsi04g01488 | 1033 | PRINTS | Sodium/potassium-transporting ATPase signature | 447 | 468 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | Sodium/potassium-transporting ATPase signature | 204 | 224 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | Sodium/potassium-transporting ATPase signature | 578 | 596 | - | - | |
| Lsi04g01488 | 1033 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 49 | IPR024750 | GO:0005516 | |
| Lsi04g01488 | 1033 | Pfam | Cation transporting ATPase, C-terminus | 854 | 1028 | IPR006068 | - | |
| Lsi04g01488 | 1033 | Pfam | Cation transporter/ATPase, N-terminus | 119 | 186 | IPR004014 | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 769 | 788 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Lsi04g01488 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 793 | 805 | - | - | |
| Lsi04g01488 | 1033 | CDD | P-type_ATPase_Ca_PMCA-like | 145 | 902 | - | - | |
| Lsi04g01488 | 1033 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 1030 | - | - | |
| Lsi04g01488 | 1033 | Pfam | E1-E2 ATPase | 237 | 432 | - | - | |
| Lsi04g01488 | 1033 | Gene3D | - | 17 | 77 | - | - | |
| Lsi04g01488 | 1033 | PANTHER | CATION TRANSPORTING ATPASE | 3 | 1030 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01488 | Lsi-Chr4:22556570 | Lsi11g00453 | Lsi-Chr11:4752213 | 0 | dispersed | |
| Lsi09g00868 | Lsi-Chr9:10096639 | Lsi04g01488 | Lsi-Chr4:22556570 | 0 | transposed | |
| Lsi11g00488 | Lsi-Chr11:5147209 | Lsi04g01488 | Lsi-Chr4:22556570 | 4.94E-19 | transposed | |
| Lsi11g00805 | Lsi-Chr11:9824443 | Lsi04g01488 | Lsi-Chr4:22556570 | 0 | transposed | |
| Lsi11g01354 | Lsi-Chr11:22164133 | Lsi04g01488 | Lsi-Chr4:22556570 | 9.99E-75 | transposed | |
| Lsi01g00892 | Lsi-Chr1:7182041 | Lsi04g01488 | Lsi-Chr4:22556570 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01488 | K01537 | - | csv:101221694 | 1899.4 |