Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01491 ATGGCCTCGGCGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGGACCACTCGCTCCAGAACAACCGCCCCCACTTCCCCAGTTGCCTCAGCCACCGCCACCGCAAATTCCAGTGACGGACCAGACTTCCGCCGCTCCATCGCCTCCCACTCCACCTCAACTGTCCCAAGCCGAAATCCTCCTCAGGAGAAGGAATAGAGATGAGATTAGAAGCGTCTATGAATGTTTTAAGCGAATTAGGTTTTTCCTTTCCCAGAAAGAGAAGGGCGCTCCCACACCTGATATCGAGCAGGCATATCTTTCTCTCATCACTGCTTCGAGAGGGTGCACCAGTGTAAAGCGTATTGTGGCTGACTTTATTCCTCGATATGCACCTCATTGTCCAACTGCTCTTGAAGCTGCAACAAAAGTTATCATCAACATGCACAATCAGAGCTTGGAAATAATAAATAATGGGGAGGATGTTGATAATGTTGCGTTTGAGACAGCAAGGACTTGTATTATTGGTTTAGTTGATATTTGTGCTGCTGTAATATCTAAGGCGCCAACATCATCTGTCATCAGAGGCATTTGTTTTGAAGTCTTTCAGAATGTTTTCACCTTCTTAGTGTCATCTTTTGAGGGAAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAAAATTCAAGATTCTGCAAATGTTTTCACCGAGTTAAAGCAGAAATATACTGATGAAAATATTTTGCCTGTGATTAAACTATCGAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCAGCTTGTTTTGAGCTTTTCAATACGTCTGCTGAGGGAGTTCACAAGGACGGGCAGTATTTTCTAAACCAGATTATACTTGGGCTGGATGATGACATCACCCATCATTTGGATAAAAGAAGTGACAACAAGACAAGCCCCAAATACTGCAAGGATGATGATAAGGAGAAAGTTTCAGTCAGTAGCCACATCTCTGTTGATGCACCATCTGTTGCAAGGAACTGCATGTTGAGCTTGGTCCTTGGAAAAGATCAATCATTTCGAAACTGGATGTTTACGCAGTATAAGAGGCTATGTGACCTGCCATCCTTTAGAGCTTTAGCAGATGTAAGATCTGCTCTGGAAGGAATTTTTGGATCATTTTCTGAGTTAATGAACAATGAAGATAGTCAAGTGAATATAGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGTAATAGATGTGAAATTTCCATGGAACTATCTGATAAAAGGAGAAAATTGAGACATTGTGATTCCCTTGAAGATGGTGTCAATGACAAAGTTTCTGGTCAACGTCGTTCATCAGTTCCTCTTGATGGCAAGCACACCACGTGTTCTGATTTTGATGCTGGCAGCTTGAGACCCATGGCCTTTGATGTTCAGGAGCCTGGAGGTTTGCTACACGGCAGTTTGCCCCAGTCACAGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATCAGACCTGCAGAACAATTCTTTTGAATGTACAAAGCATTCAATTGATGGCAATCAAGTTTCAAGTGTTGATTGCAACTTTTCTGCTCAGAGATTGTCTACTGGAGATATCAATAATGATCTTGTGCCTCCTAGACATCAACTATCAGTGCCATGTAGTTCTACAACTTCTCATAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCTTCCAAACAGCTATGGGTGGGTCTTTTAGGCCCAGAGGCATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAAGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTAGGAACTAGGGGTTCCACCCACGGGGTTGCAATTGGTTCCAGTTTGCATGTTTATGTTGGAAATGTTTTGAGCTACTGGGTGAAGGATGAGATTCTGCATGAGACAAGGAAAGCGCTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAATGAGGGTGCATTGCTGATGGAATTTGAGACTCCAGAAGAAGCTGCAGTTGTAATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGCCACCTCCAAATGCAGGACAAACGAATATTGCACCACCTTATTTAGATGGTGGGAGATCTGCTTGTGCCTGTACTGGTGGTAATATCAGAAGCAACAATCCTGCAAACATGCCCAATAGTATGGTTGGGTCACCTCATGCTCCGATGGTCCCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTACTCTATACACTGCGTGCAAAATACAACATCAATCAAAACTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACTTCAATGAGGGAAGAAGACAGAACTCCTACTAGCGCTCTCTGGGTTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAAGATCTGTAATCTTGCCATGACCAATACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTTCAGGTGGGTTGTGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCTGCAATAACCCTCTTGAAGAATCTCCGTGGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTAAACCAGGTAGATTCCATGCAGCACCTTTTCTGAGGAGCCATGATAGTTGTGCTGTGGAGCATCCATCTCCCAGAATATTACATGAGAATCATGCAATACCTCAGCAAGGTGGATATTCCTATCAGTCAAACTGGGCTCCTTCTGGTGGTCATACAGAGATGCTTGAAATAGGGGTCGGACAGACTGATGCTTGTGAAAAAAACCTGCTGATAGATCATCCACAAGGTGGCCACATAGTGTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCCGCTCCACCACCTCCACCACAGATTCAGCCACCTCCATTTGTTCGAGCTCCATACCCTCCTCCAAACAGTTCTTGGGATGGAAGAGGTTTAAACCATCCTTTGCCTTTAAATCCAATATCACCAAGTGTTATACCGAATAATTTTCCAGGTAGTTCAGTTGCATGCCCTCCCTTTTTACCTGCTTCCGTGACACCTCTTGCTCAGATACAAGGAACTCCAATGCAGCAGCATCTAGACCATGTTTTCCCCTATCCGGTTGCTCCGCCATCAATATCTCTACCACCTTCCCAGCCCGAGATGCCTCCTCCCATGCCTTCATCTCCACCACCTTTGCCTCACTCACAACCACCTAATATTCCTCCTCCACCCAGTTCTCCTCCGCCTCCACCTCCACCCCTAGCGGCCACAGGAACCAGTGAAGTGGAAAATTATAGCCAGCATGTTCTATATCAATGGCAAGGTGCACTTTGTAAAAGCGGGGTTCAGTACTGTACAATTTATGCAAAAAGAGTGGATTCCCAAACTTGCAAATATTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAACGCACAGATTTTAGGCATGTGAAGTCAACATTCACCAGCACTTCACCAAGTAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGACCATAAAGGATTTCAAGATTTTGTATCATATTTGAAGCAGAGGGATTGTGCGGGAGTAATAAAGATACCGGCTACTAAATCTCTATGGACAAGGCTTCTGTTTATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCACCAGCTCTCAAAGACTCGAGATTCGCACGTCGGAGTCCAAAGTGGAATTCCAAACCCAAGTCCGGTTTGGCAGCGCCAGCCACCAATTACATAGCCGAAGAAAGGTATAAATTACAAGCCAACCGAATCGTCTTCCTCTTCCTCCTCTCCACCCGGCGCTCTCTTCTTCCTATCCGATCATCAACGCAGTCATCTGAATTCAGAATGTCTAATCGTTACAATCACGATGGAAACAAGGGTTTAAGGAAAGATCAGAAGAAGTACATCCCCAAGAATCAAAATCAATCCACAAATGAACTCCCCAACCCTAAACCTACCCTTTCCACTTCTCTCAGACAATCGCTTCCTAAGCCATCCGACTCTGCTGCTGTTACCACTTCTGCCACACCATCAATGAATAGGATTCAGATGGGTGCGAATGGAGATTGGGTGTCTAGCAGAGCTAGTGGTGGCAGTTTCGTGAATTACTTGCCACAGGACGAGGCCGTTGCTACTGGTCTTCGTGCCGAAGAAGGAGCATTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTGAACAGAGAGTTGTCTCGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGAGAGAAGTGGCTATGGATACTTCCTTGCATGAATTTCTCGATAGCTTCCTAAAATTTAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTCGCAGGGGTTATAGTTGGAGAATATGAATTAAGCCGCCGTGTTTTCATGGTATTATATCGCATGTCTTCCAATAGGGATCCTGGCGCACGAGCTGCTGATAGCCTCAGTTTAAAAGATCATGGAGTCCTTCTGCAGGGAAAGAAGTTGCTTGATCTTCCAAAGTTACTTGATATATGTGCTATATATAGTCATGAGAATGAAGATCTAACTAGAATACTGGTTGAGAATGCTATAAAATCTCAGCCTAGTATTCATGAAACTTTACCATCAGTTATATCTCACTTCCTCAGCATTGCCTCTATGATGCATCAAAGGTGCAACTCATCTCTTGAGACTCTCTTCTCCTCGAGTAGCCATGGAGGAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATGGATTTTATCAATGATGCAATTGTCACTCTGGACTCTTTCGTCACTGCATACAGACTGGCAGCTATATTCTTCTCCTCTGCTGTTGAAATAAGCTGCGGGAATGAGGATTTACTTGGAACTCTTGCAAGGTTGCATGATTTACTACTTCCATCTTTACAGCAGGGATTTCAAATTGTCCTTGTGCCCCAAGGAGATGAAATGATGTCTAATGTTGCAACAAGTTTGAAAATGCTAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTTGGAAATGACGTCCCTGTTCCAGTCTCTATGAAGATGTTCCCTGCAACTGTTGAAGATCCCGTCATAAGAGCAGATATCTTGATTCAAACTTTGAGAGAAATCAATGGAATCTCACAACAGGCTTCGGATAAACAACTTGCTCAAACATTTCTTCAGCGTATGGAAAAGAACCACACCGTAATGAACAGAATCAACAGTTTACGAAACAATGGATGGATATTTGTCGATGATGAACAATTTGATTATCTATCAACAATAGTTATGTATACCCCCACGTCTGATATTAAGGATCCATCTCTTTCTAAGGCCCCCGTGATGAGCCACATATCAGAAGTAGATGAGGATGCTGCAATGTTGGAGTCGAAAATCTGTCAAATAAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTCTAGCTGCATGTCTGGTAGCTTACAATCAGAACCCTGAAGAAGTGATTCAACGAATCCTTGAGGGAACTCTTCATTCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCAGTGCGCAATTCTAGTGCAACCGCTAATAATAGGAACGACAAAGGAAAAGGAAAACTGTTTGAGTCTTCAACAGTTGACTACACCGACCAAGTCTCTCGTGGTAAAGATTTACTGTCTGAAGGCCCCTCAGTTTCATCACCCTCTGTTGGCAGATTTGTTCGAAAGTCTAAAGATGACATGCCGTACTCAGAGACCCTTGATGATAGAAATGAAGCAGATCCAGTGAGGACTGCAGCTTTAATTTCTCAATATGAGTATGAAGATGAGTATGATGACTCTTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAAGATAATGAAGACTTGGTAAAGCTAAGTTCCCATTTAGGTAGCTCATCAAACTCAACAAATGGAAGTTCAGCACAAAATGCTCCCAACTCAAAGTGGGGATCTAGAAGAAAACCACAATACTACGTCAAGGATGGTAAGAATTATAGTTACAAAGTTGCAGGGTCGGTTGCAGTTGCCAATTCTGATGAGGCATCTTTAGTAACTCAAGCTCAGAAAGAACTCATTTATGGACTTGGACGTGGAGGCAACTTGCCTCTCGGGGCAGTAAAAAAGCTGACAGAGTCTGAGCAGGATAGCCAACCTGATGTTTCTGCAGTAGATCCAAGAGATAATGTACGGAAGTCTTGGGGCAGAGGAAGGAGGGAAAGTGGAACAGCTTTAGGCATTCCTGAAGGACAAGGTAAACAACCAAATGTGGCTGAGGTTTCAGACAGGGGAGGAAGAGGTGGCAACAGAGGCCGTGGAAGGAGAGGAGGGGGCGACCATCACAGGAAGGATAGAGCCATGAAAAAGCATTTTGCTGGATTGTCTGGTTTCTAA 6669 43.47 MASAEQPLKKRRNYGPLAPEQPPPLPQLPQPPPPQIPVTDQTSAAPSPPTPPQLSQAEILLRRRNRDEIRSVYECFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCTSVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLEIINNGEDVDNVAFETARTCIIGLVDICAAVISKAPTSSVIRGICFEVFQNVFTFLVSSFEGKDIFQIVDKEALKIQDSANVFTELKQKYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNTSAEGVHKDGQYFLNQIILGLDDDITHHLDKRSDNKTSPKYCKDDDKEKVSVSSHISVDAPSVARNCMLSLVLGKDQSFRNWMFTQYKRLCDLPSFRALADVRSALEGIFGSFSELMNNEDSQVNIDEEMSDSLKHSTRNRCEISMELSDKRRKLRHCDSLEDGVNDKVSGQRRSSVPLDGKHTTCSDFDAGSLRPMAFDVQEPGGLLHGSLPQSQDPLSKHDHLSYAKTSSDLQNNSFECTKHSIDGNQVSSVDCNFSAQRLSTGDINNDLVPPRHQLSVPCSSTTSHSLWFSDGDPSAMDIFSASKQLWVGLLGPEASEAHIRYQFERFGYIEHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSLHVYVGNVLSYWVKDEILHETRKALNKGPYMVSDLGNEGALLMEFETPEEAAVVMAHLRQHRREKNIHWPPPNAGQTNIAPPYLDGGRSACACTGGNIRSNNPANMPNSMVGSPHAPMVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRTPTSALWVSFPNFNSPFVTDEELMKICNLAMTNTGSVVRMTRASVQVGCGWFVECSSVDAAITLLKNLRGCPGIFLRIEFSKPGRFHAAPFLRSHDSCAVEHPSPRILHENHAIPQQGGYSYQSNWAPSGGHTEMLEIGVGQTDACEKNLLIDHPQGGHIVSGTIPCLPISTMGPPAPPPPPQIQPPPFVRAPYPPPNSSWDGRGLNHPLPLNPISPSVIPNNFPGSSVACPPFLPASVTPLAQIQGTPMQQHLDHVFPYPVAPPSISLPPSQPEMPPPMPSSPPPLPHSQPPNIPPPPSSPPPPPPPLAATGTSEVENYSQHVLYQWQGALCKSGVQYCTIYAKRVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFRHVKSTFTSTSPSKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKSLWTRLLFILPYSQDSCSLLSIPPALKDSRFARRSPKWNSKPKSGLAAPATNYIAEERYKLQANRIVFLFLLSTRRSLLPIRSSTQSSEFRMSNRYNHDGNKGLRKDQKKYIPKNQNQSTNELPNPKPTLSTSLRQSLPKPSDSAAVTTSATPSMNRIQMGANGDWVSSRASGGSFVNYLPQDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWREVAMDTSLHEFLDSFLKFRSRWYDFPHRGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHGVLLQGKKLLDLPKLLDICAIYSHENEDLTRILVENAIKSQPSIHETLPSVISHFLSIASMMHQRCNSSLETLFSSSSHGGSGYSKLQADFLEVMDFINDAIVTLDSFVTAYRLAAIFFSSAVEISCGNEDLLGTLARLHDLLLPSLQQGFQIVLVPQGDEMMSNVATSLKMLALRIVSLGWKLLEICYLGDEVFGNDVPVPVSMKMFPATVEDPVIRADILIQTLREINGISQQASDKQLAQTFLQRMEKNHTVMNRINSLRNNGWIFVDDEQFDYLSTIVMYTPTSDIKDPSLSKAPVMSHISEVDEDAAMLESKICQIKDLFPEYGSGFLAACLVAYNQNPEEVIQRILEGTLHSDLQSLDTSLETMPVRNSSATANNRNDKGKGKLFESSTVDYTDQVSRGKDLLSEGPSVSSPSVGRFVRKSKDDMPYSETLDDRNEADPVRTAALISQYEYEDEYDDSFDDLGISIAETATEDNEDLVKLSSHLGSSSNSTNGSSAQNAPNSKWGSRRKPQYYVKDGKNYSYKVAGSVAVANSDEASLVTQAQKELIYGLGRGGNLPLGAVKKLTESEQDSQPDVSAVDPRDNVRKSWGRGRRESGTALGIPEGQGKQPNVAEVSDRGGRGGNRGRGRRGGGDHHRKDRAMKKHFAGLSGF 2222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22587566 22604099 - Lsi04G014910.1 Lsi04g01491 661540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1100 1147 - -
Lsi04g01491 2222 Gene3D - 574 657 IPR012677 -
Lsi04g01491 2222 SUPERFAMILY RNA-binding domain, RBD 569 642 IPR035979 GO:0003676
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 2053 2080 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 17 53 - -
Lsi04g01491 2222 SUPERFAMILY UBA-like 1878 1936 IPR009060 GO:0005515
Lsi04g01491 2222 SMART cue_7 1878 1920 IPR003892 GO:0043130
Lsi04g01491 2222 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1290 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 2135 2222 - -
Lsi04g01491 2222 Gene3D - 1877 1921 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1100 1152 - -
Lsi04g01491 2222 Pfam SPOC domain 1157 1285 IPR012921 -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1 56 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1967 2007 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1354 1373 - -
Lsi04g01491 2222 ProSiteProfiles CUE domain profile. 1878 1921 IPR003892 GO:0043130
Lsi04g01491 2222 CDD CUE_ASCC2 1880 1919 IPR041800 -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 2053 2076 - -
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1988 2007 - -
Lsi04g01491 2222 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1290 - -
Lsi04g01491 2222 Pfam CUE domain 1885 1920 IPR003892 GO:0043130
Lsi04g01491 2222 MobiDBLite consensus disorder prediction 1380 1417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01491 K18667 ASCC2; activating signal cointegrator complex subunit 2 - qsu:112027153 2274.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01491 Lsi_Chr04 FPKM 9.901882 11.47748 1.301892 1.05328 10.341187 9.935553 10.847902 3.195759 3.134875 3.410986