Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01492 | ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCTATTAATATTAATATTCCTGATCAACCCACTTCAGGCTTCATGGCCGATGCTTGGTTTTGTTCTTTGGATTCCTTCACTGCTAATTTGCCTTCTTTTCATGTTGGTAATGCTATTGATCAGTTTGCTGCTGCTGCTTCTGATCAACATCATCATCATCATCATCATATATCCATGTCAATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTAGTACTGAAATCTTGCTGCAAGAAATCGCTGGCTTTTCGAATGAAGATAAATTTCTTAACATGGATGTTCAAACCCACCTAGGGGATGATGGTAATAATGCTACCAATAATTCTGCAAACGCAGCATTCCACCATAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTTCAAACAATGTGCAGAAAAGTAGGAAGGGCAGAGAATCAAGTGGTAATAGTAATAGCAAATTAGAGAAAGTGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAACAAGAAAATGGGGGGTCGTGCGATATGAACAGTTGCAGCAGCGATAGCTCATCAGAAAACGACAATGCTTCACAAGATACTAATAATGGCGATGCCACCGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGTTGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTCCAGCAGAAGCTTTCTTCATTTTTATGA | 1011 | 40.45 | MDSFGGFNGEGEWDLCSSILSLEDLDFTPININIPDQPTSGFMADAWFCSLDSFTANLPSFHVGNAIDQFAAAASDQHHHHHHHISMSIEENKMESIFSASSTEILLQEIAGFSNEDKFLNMDVQTHLGDDGNNATNNSANAAFHHKRKSIVVDDDHNKLINPNKKIRTSNNVQKSRKGRESSGNSNSKLEKVSSTRRRKCEEEQENGGSCDMNSCSSDSSSENDNASQDTNNGDATVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22609862 | 22611717 | - | Lsi04G014920.1 | Lsi04g01492 | 661541 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01492 | 336 | Gene3D | - | 254 | 310 | IPR036638 | GO:0046983 | |
Lsi04g01492 | 336 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
Lsi04g01492 | 336 | MobiDBLite | consensus disorder prediction | 164 | 191 | - | - | |
Lsi04g01492 | 336 | Pfam | Helix-loop-helix DNA-binding domain | 262 | 302 | IPR011598 | GO:0046983 | |
Lsi04g01492 | 336 | PANTHER | TRANSCRIPTION FACTOR BHLH54 | 66 | 334 | - | - | |
Lsi04g01492 | 336 | MobiDBLite | consensus disorder prediction | 148 | 259 | - | - | |
Lsi04g01492 | 336 | MobiDBLite | consensus disorder prediction | 148 | 163 | - | - | |
Lsi04g01492 | 336 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 66 | 334 | - | - | |
Lsi04g01492 | 336 | CDD | bHLH_AtIND_like | 253 | 315 | - | - | |
Lsi04g01492 | 336 | SMART | finulus | 258 | 307 | IPR011598 | GO:0046983 | |
Lsi04g01492 | 336 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 252 | 301 | IPR011598 | GO:0046983 | |
Lsi04g01492 | 336 | MobiDBLite | consensus disorder prediction | 208 | 236 | - | - | |
Lsi04g01492 | 336 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 251 | 318 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01492 | Lsi08g01523 | CCT | |
Lsi04g01492 | Lsi08g01523 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01026 | Lsi-Chr3:19818463 | Lsi04g01492 | Lsi-Chr4:22609862 | 5.24E-25 | dispersed | |
Lsi04g01492 | Lsi-Chr4:22609862 | Lsi06g01169 | Lsi-Chr6:21956891 | 1.15E-22 | dispersed | |
Lsi09g00933 | Lsi-Chr9:11651483 | Lsi04g01492 | Lsi-Chr4:22609862 | 4.59E-09 | dispersed | |
Lsi03g00573 | Lsi-Chr3:7014859 | Lsi04g01492 | Lsi-Chr4:22609862 | 4.40E-51 | wgd | |
Lsi04g01492 | Lsi-Chr4:22609862 | Lsi08g01523 | Lsi-Chr8:23282865 | 2.10E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25205 | PF00010 | HLH | 1.00E-08 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01492 | - | - | csv:101209196 | 356.295 |