Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01492 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCTATTAATATTAATATTCCTGATCAACCCACTTCAGGCTTCATGGCCGATGCTTGGTTTTGTTCTTTGGATTCCTTCACTGCTAATTTGCCTTCTTTTCATGTTGGTAATGCTATTGATCAGTTTGCTGCTGCTGCTTCTGATCAACATCATCATCATCATCATCATATATCCATGTCAATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTAGTACTGAAATCTTGCTGCAAGAAATCGCTGGCTTTTCGAATGAAGATAAATTTCTTAACATGGATGTTCAAACCCACCTAGGGGATGATGGTAATAATGCTACCAATAATTCTGCAAACGCAGCATTCCACCATAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTTCAAACAATGTGCAGAAAAGTAGGAAGGGCAGAGAATCAAGTGGTAATAGTAATAGCAAATTAGAGAAAGTGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAACAAGAAAATGGGGGGTCGTGCGATATGAACAGTTGCAGCAGCGATAGCTCATCAGAAAACGACAATGCTTCACAAGATACTAATAATGGCGATGCCACCGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGTTGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTCCAGCAGAAGCTTTCTTCATTTTTATGA 1011 40.45 MDSFGGFNGEGEWDLCSSILSLEDLDFTPININIPDQPTSGFMADAWFCSLDSFTANLPSFHVGNAIDQFAAAASDQHHHHHHHISMSIEENKMESIFSASSTEILLQEIAGFSNEDKFLNMDVQTHLGDDGNNATNNSANAAFHHKRKSIVVDDDHNKLINPNKKIRTSNNVQKSRKGRESSGNSNSKLEKVSSTRRRKCEEEQENGGSCDMNSCSSDSSSENDNASQDTNNGDATVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22609862 22611717 - Lsi04G014920.1 Lsi04g01492 661541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01492 336 Gene3D - 254 310 IPR036638 GO:0046983
Lsi04g01492 336 MobiDBLite consensus disorder prediction 192 207 - -
Lsi04g01492 336 MobiDBLite consensus disorder prediction 164 191 - -
Lsi04g01492 336 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983
Lsi04g01492 336 PANTHER TRANSCRIPTION FACTOR BHLH54 66 334 - -
Lsi04g01492 336 MobiDBLite consensus disorder prediction 148 259 - -
Lsi04g01492 336 MobiDBLite consensus disorder prediction 148 163 - -
Lsi04g01492 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 334 - -
Lsi04g01492 336 CDD bHLH_AtIND_like 253 315 - -
Lsi04g01492 336 SMART finulus 258 307 IPR011598 GO:0046983
Lsi04g01492 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Lsi04g01492 336 MobiDBLite consensus disorder prediction 208 236 - -
Lsi04g01492 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 318 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01492 Lsi08g01523 CCT
Lsi04g01492 Lsi08g01523 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01026 Lsi-Chr3:19818463 Lsi04g01492 Lsi-Chr4:22609862 5.24E-25 dispersed
Lsi04g01492 Lsi-Chr4:22609862 Lsi06g01169 Lsi-Chr6:21956891 1.15E-22 dispersed
Lsi09g00933 Lsi-Chr9:11651483 Lsi04g01492 Lsi-Chr4:22609862 4.59E-09 dispersed
Lsi03g00573 Lsi-Chr3:7014859 Lsi04g01492 Lsi-Chr4:22609862 4.40E-51 wgd
Lsi04g01492 Lsi-Chr4:22609862 Lsi08g01523 Lsi-Chr8:23282865 2.10E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25205 PF00010 HLH 1.00E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01492 - - csv:101209196 356.295