Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01494 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGTGAAACGTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCAACTCTGTTTCTTGCTAAATTCTTCGGTCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGCCGCACGGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGTGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCAATACCCGGAATCGAAATTTCTGGAAATCCCACGCCCAACGTCGATGATTCATCGCTTACTTTCAATACCGATGTCTGGACTACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCAAATTTCCGGTGCTTTCCCGATCTCGCTCTCGGCAGAGCGAAGAATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCACGGCGACCGACGGAAAGAGACGAAGCTTTTGAACTTATTCGTCTGA 612 50.82 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVDTVLNGGVLRPIPGIEISGNPTPNVDDSSLTFNTDVWTTTTHNLQFYPSTPSNFRCFPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDHGDRRKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22637568 22638890 + Lsi04G014940.1 Lsi04g01494 661543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01494 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lsi04g01494 203 MobiDBLite consensus disorder prediction 166 191 - -
Lsi04g01494 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lsi04g01494 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 203 - -
Lsi04g01494 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01494 Lsi-Chr4:22637568 Lsi05g00382 Lsi-Chr5:4824488 3.19E-49 dispersed
Lsi01g00909 Lsi-Chr1:7333830 Lsi04g01494 Lsi-Chr4:22637568 7.51E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25207 PF03195 LOB 1.60E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01494 - - csv:101208953 392.889