Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01494 | ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGTGAAACGTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCAACTCTGTTTCTTGCTAAATTCTTCGGTCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGCCGCACGGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGTGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCAATACCCGGAATCGAAATTTCTGGAAATCCCACGCCCAACGTCGATGATTCATCGCTTACTTTCAATACCGATGTCTGGACTACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCAAATTTCCGGTGCTTTCCCGATCTCGCTCTCGGCAGAGCGAAGAATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCACGGCGACCGACGGAAAGAGACGAAGCTTTTGAACTTATTCGTCTGA | 612 | 50.82 | MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVDTVLNGGVLRPIPGIEISGNPTPNVDDSSLTFNTDVWTTTTHNLQFYPSTPSNFRCFPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDHGDRRKETKLLNLFV | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22637568 | 22638890 | + | Lsi04G014940.1 | Lsi04g01494 | 661543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01494 | 203 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Lsi04g01494 | 203 | MobiDBLite | consensus disorder prediction | 166 | 191 | - | - | |
Lsi04g01494 | 203 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Lsi04g01494 | 203 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 203 | - | - | |
Lsi04g01494 | 203 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 39-LIKE | 1 | 203 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01494 | Lsi-Chr4:22637568 | Lsi05g00382 | Lsi-Chr5:4824488 | 3.19E-49 | dispersed | |
Lsi01g00909 | Lsi-Chr1:7333830 | Lsi04g01494 | Lsi-Chr4:22637568 | 7.51E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25207 | PF03195 | LOB | 1.60E-23 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01494 | - | - | csv:101208953 | 392.889 |