Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01503 ATGGAGAGAAAACAAGGATTCTTCTCGGCGCTAAAGGGGGAGATAGTGAGAGGGCTTTCACCTGGAAGGTCAAGAGCCAAAAGTCCGGCGAGAAGTGCGTCTCCCATGTCGGGTTTACTACGGCGGAGGAAGAACCACCAAATGTCGCAACCGGACTTGATGATTGAGAGATCCGGAAGCTTAAGGCCGGAGGAGGCATTGTCTCCGTTGAAGGAAGGGCCTGACGGGAACGAGAGCAGAGATTCGAAGGAGGGGAAATGGGGAAACTGGATGAGGGGTCAACTTTGTAGGGCACCTTCGGCTGTTTCTTGCTCTGCCCAGAAACGATCTGATCTGAGGCTGCTACTTGGAGTTTTGGGTGCTCCGTTAGCTCCTGTTCATGTTAGCTCCACCGAGCCTCTGCCCCACCTCGCCATTAAAGACATCCCCATTGAAAATTCATCTGCTCAGTATATACTGCAGCAGTACACAGCAGCCTCGGGAGGGCAAAAGCTTCAAAACTCTGTTAGCAATGCCTATGCCATGGGAAAGGTGAAAATGATAGCATGTGAGTTTGAAACAGCTAACAAAGTGGCGAGAACCCGAAATTCCTCGAAAGATGCAGAGTCAGGCGGTTTTGTTTTGTGGCAGATGAAGCCGGATATGTGGTATGTTGAGCTTGCTCTGGGTGGTAGCAAGGTTCATGCTGGTTGCAATGGCAAGCTAGTATGGAGGCACACACCTTGGCTTGGCGCTCATGCTGCCAAAGGGCCCGTTAGACCCCTTCGCCGTGCCCTTCAGGGACTTGATCCAAAAACTACAGCAAGCATGTTTGCTAGTGCAAGATGCATCGGGGAGAAAAGTGTTAGTGGTGAAGATTGTTTCATCCTCAAGCTCTGTACAGATCCTTCAACGTTGAAGGCAAGAAGTGAAGGACCTGCAGAGATAATTAGACACACTATGTTTGGCTACTTCAGCCAGAAATCTGGGCTCCTTATACATTTAGAAGATTCACATTTAACTCGAATCCAAAACAATGGAAGCGATGCTGTCTATTGGGAAACCACAATCAATTCGTTTCTTGATGACTACCGACCAGTAGAGGGGATTATGATTGCTCACTCCGGTCGATCTGTAGTAACACTTTTCAGATTTGGGGAAACAGCCATGAGTCACACTAAAACCAGGATGGAAGAAGCTTGGACTATTGAGGAAGTAGCATTTAATGTCCCTGGTCTATCCATTGATTGCTTCATACCCCCTGCTGAACTTAGATATGCTTCCATGAGCGAGGCGTGCGATTTCCCACGAGGACATGGCTTTAAGAACGCCATGGCAGCAGCAGCATATCGTGCCAAAGTTGCAGCGCTAGAGAAGAATCACGACAGCAAGGTCAAAGTTATCTGGAAACCAGATATCTGA 1401 48.61 MERKQGFFSALKGEIVRGLSPGRSRAKSPARSASPMSGLLRRRKNHQMSQPDLMIERSGSLRPEEALSPLKEGPDGNESRDSKEGKWGNWMRGQLCRAPSAVSCSAQKRSDLRLLLGVLGAPLAPVHVSSTEPLPHLAIKDIPIENSSAQYILQQYTAASGGQKLQNSVSNAYAMGKVKMIACEFETANKVARTRNSSKDAESGGFVLWQMKPDMWYVELALGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASMFASARCIGEKSVSGEDCFILKLCTDPSTLKARSEGPAEIIRHTMFGYFSQKSGLLIHLEDSHLTRIQNNGSDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPAELRYASMSEACDFPRGHGFKNAMAAAAYRAKVAALEKNHDSKVKVIWKPDI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22685172 22687994 - Lsi04G015030.1 Lsi04g01503 661552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01503 466 PANTHER LIPASE 1 464 - -
Lsi04g01503 466 Pfam Protein of unknown function (DUF620) 173 414 IPR006873 -
Lsi04g01503 466 PANTHER LIPASE 1 464 IPR006873 -
Lsi04g01503 466 MobiDBLite consensus disorder prediction 1 87 - -
Lsi04g01503 466 MobiDBLite consensus disorder prediction 68 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01503 - - - csv:101219963 887.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01503 Lsi08g01511 CCT
Lsi04g01503 Lsi08g01511 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01038 Lsi-Chr3:19924844 Lsi04g01503 Lsi-Chr4:22685172 0 dispersed
Lsi04g01503 Lsi-Chr4:22685172 Lsi11g01584 Lsi-Chr11:24249259 1.52E-127 dispersed
Lsi04g01503 Lsi-Chr4:22685172 Lsi08g01511 Lsi-Chr8:23202251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g680 . Blo12g00981 . Bda03g00190 . Bpe04g00163 . . Cmo05g00154 Cmo12g00522 Cma01g01799 Cma09g00273 Car01g01405 . Sed07g1274 Cpe06g00188 Cpe07g00507 Bhi04g00397 Tan02g1763 Cmetu05g0170 . Hepe08g1318 . Lcy13g2121 Cla08g01607 Cam08g2108 Cec08g1693 Cco08g1817 Clacu08g1793 . Cre08g1576 . . . . Lsi04g01503 Csa04g02462 . Cme03g02086 . Blo18g00711 Bda08g01367 Bda01g01597 Bpe02g01784 Bpe05g00485 Bma01g00671 . Sed01g2704 Cmo01g01858 Cmo09g00269 Cma12g00584 Cma05g00154 Car05g00134 Car09g00228 Cpe11g00130 Cpe02g00209 Bhi09g03249 Tan01g4717 Cmetu07g2112 . Hepe01g1813 Mch11g0345 . Cla05g02091 Cam05g2244 Cec05g2263 Cco05g2304 Clacu05g2240 Cmu05g2103 Cre05g2227 Lsi08g01511 Csa02g01909 Chy07g00176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000467 4 3 4 6 4 3 6 3 3 3 3 3 6 3 3 5 3 8 6 3 3 4 3 3 3 3 3 7 4 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01503 Lsi_Chr04 FPKM 12.789272 12.997376 24.517748 26.03293 6.670219 2.913094 7.945958 4.835628 9.358134 11.33379