Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01505 ATGTTTTGTTGCCAAATGGCTTCAGGCTACAGACGAACAGCTATGGGAGCTATCTTTCTTTACATCCCTCTGTTTCTTGTGTTTTACATTTTAACAGAGCACTTCCTTCACAAGATCAGAAACCTCCCGCCCACCCCTTTCCCATCACTACCCATCCTTGGCCATCTCCACCTCTTGACCAAACCCATCTACCGCACTCTATACAACATCTCGAACCGCTACGGTCCAGTCGTGTTCCTCCGGTTGGGGTCTCGCTCGGTCCTGATCGTGTCGTCTCCTTCTGTAGCTGAAGAATGTTTGACTAAAAACGACATCGTGTTTGCAAACCGGCCTCGTCTCCTCATATCCAAGTGCTTCGGATACAACAGTACGAATCTCATTTGGTCATCCTATGGGGACAATTGGCGCAACCTCCGCCGAATCTGCACCGTTGAAATTTTGTCCACTCACCGCCTTCATATGCTTTCCATTGTTCGTTTTGAAGAGGTTAGGTCTTTAATTCAACGGCTTGTGAAATGTGAAAACCAAATAGTTAACATGAAAAATGCATTTTTCGATCTGACTTTCAACTCGATGTTGAGGATGATTGTTGGAAAACGTTTCTATGGCGATGACGTAGACGATGTTGACGAGGCAAAATTATTCAGGGAGTTACAAGCTGAGTCAACTCGGTTGACTGGTAAATCATATATAGGAGATTTTATTCCATTAATGGCATGGTTGGGATTTGGTTCGACTTTAGGGGAAGAGATGTTGGATTGTCAAAATCGAAGAGATGCTTTGATGCAGAGTTTAATCGAGCAACATCGAGGAAGAACGACAAAAATCGATGATTCGTTTCGTGATGGAAGAAAGAACACGATGATTGAAGTATTGTTAGAATTGCAAGAATCCGAACCTGAACAATATAAAGACGAAACTATCAGAGCGTTGATGCTACTTATGTTAGTAGCAGGTACAGAAACATCAGGAAGCACAATGGAGTGGGCTCTATCTCTTTTATTAAACCATCCAGAAATTTTAAAGAAAGCACAAAACGAAATTGACGATCAAGTTGGCCACGAACGTCTGATTGACGAATCCGACGTGGCCCACCTTCCTTACCTACGTGGCATCATCAACGAGACCCTTCGGATGTACCCTCCAGCTCCATTACTAGCACCTCATGAATCATCAGAAGACTGCTCTGTTGGAGGCTACCATATTCCACGTGCCACTATGTTATACATCAATATATGGGCCATTCAGAACGACCCCAAAATTTGGGCCCACCCGAGAAAATTTGACCCCGATAGGTTTAACCGGTTGGAAAGTGAAAATTACAAGTTCAATTTGATGCCATTTGGGTTGGGGAGGAGGGGGTGTCCAGGAGAGGGTCTGGGCCTACGAATGGTTGGACTTGTATTGGGCTCATTGATTCAATGCTTTGAATGGGAGCGTCCTAGTGACGAATTGGTGGACATGACAGAAGGGATTGCAGTGACAATGCCCAAAGCCCAACACTTACATGCTAAATGCAGGCCCAGGCCCATAATTAGGTTGAGCTTGCAACTTGTCGTCGGCTTGCCGTTGACCGTCTGCCCCGTCGTCAGTGCAATGGCTTTACTTCATTCAGTCTCAGTAACTTGGGGGCAAGCGGAGAGGGCATTTTACCGGGTCCTCTCTGCGCCAATTTCCGTCATTTCTCTTCCGTTTGCACCGTCGCGTACGGTTCACCGGCACACCATGTCTCCGCCCTGCGCCAATTCATACTATGCCATCGTCTTCTATTATCTAGTTGGTTTTAATTTGCTAGGCATGATTCTTTCCTCTTCTGTGGACTCGAGAGATTTCGATTATCAGCAACGGCCGGTGCTTCTTCCTCTTTATATCTCGCCCATGAATTCTACTCATCAGCGCGTTTTAGACCGTGATCACCGTCTCCGGCACCTGCAGAACTTGGACAAGCCCCATTCGTCAAATGCTCGAATGAGGCTTCACGATGACCTCCTTACCAACGGGTATTACACGACGCGTCTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGATACCGGAAGTACTGTGACATACGTTCCATGCTCTAACTGCGTAGAGTGCGGGAATCATCAGGATCCAAGGTTCCAACCAGAGTTGTCTAGCACATATCAACCTGTTAAGTGCAATGTTGATTGTAACTGTGATGACAACGGAGTCCAGTGTACATACGAGAGAAGGTATGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTCGTACCCCAGCGTGCTGTCTTTGGCTGTGAAACTATGGAAACTGGTGATCTTTATACCCAACGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGTTGTGAGCAATTCATTTTCATTATGTTATGGTGGGATGGATATTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCATGGCATGCTTTGGGATGGAAACAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCGAGCACTTTTAATGGGAAGTATGGTGCTATCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTCAAGGACGCTATAATGAAGAAAATTAGTTTTCTGAAACAAATCAATGGTCCTGACCCGAATTTTAAAGATATTTGTTTCTCTGGTGCTGGAAGGGATGTCACTGAACTTTCAAAAGTTTTTCCAGAGGTTGATATGGTTTTTGCTAATGGACAGAAAATTTCTCTTTCTCCAGAGAACTACTTGTTCCGGCATACTAAGGTTAGTCGTGCATATTGTCTGGGGATCTTTAAAAACAGGAATGATCAGACGACACTTTTGGGAGGTATGGCAAAGTTTCCCTGGATTTACTTCTTTAGAGTAAAGCTGCATGGTTTCTTTCCATCGGCAGGAATTATTGTTCGTAATACTCTTGTCACTTATGATCGAGAGAACACTACAATTGGGTTTTGGAAGACTAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCTCCTTTACCTTCCTATGGTCAGAATACAAGTAAAGAAATCCCTCCACCTGGTTCTCCAACTGGGCCATTTCTTTCTGGTGAATTTCAGGTTGGAGTCATAACATTTAATATGATGCTTCATGTCAACAAATCCTCCGTGAAACTTAACATCACTGAACTTGCAGAAGTTATTGCCGATGAACTTGAAGTAATAATGAATTTAGAGTCAAATCTTTTCACCGTTCATGTTATCTCTTGTCGACTCTCCACCCTTGTTCATGTGCTGAACTTTACATCGAGGGAAGCTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGACTCTGCTGGTTATATATCTAATTCCACGGCAATGGACATAATATCTCGCTTAAAGGAACGTGGCTTGCAACTTCCTGATAAATTCGGAAGTTATCAGCTGGTTGAATTGAATGTTGAACCCCCGTTAAAGAAGACATGGATGGAGCAGCACTTCTGGTCTGTAATGACTATTGGAGTAGCAGTTACCTTAGTAGTTGGATTGGCAGCCGGAAGCACATGGTTGATTTGGAGATACAGACGGAGGGAACTGAGTTCGTATGAGCCTGTCGGTGTAGTCGGACCTGAGCAAGAGCTTCAGCCACTATAG 3765 44.46 MFCCQMASGYRRTAMGAIFLYIPLFLVFYILTEHFLHKIRNLPPTPFPSLPILGHLHLLTKPIYRTLYNISNRYGPVVFLRLGSRSVLIVSSPSVAEECLTKNDIVFANRPRLLISKCFGYNSTNLIWSSYGDNWRNLRRICTVEILSTHRLHMLSIVRFEEVRSLIQRLVKCENQIVNMKNAFFDLTFNSMLRMIVGKRFYGDDVDDVDEAKLFRELQAESTRLTGKSYIGDFIPLMAWLGFGSTLGEEMLDCQNRRDALMQSLIEQHRGRTTKIDDSFRDGRKNTMIEVLLELQESEPEQYKDETIRALMLLMLVAGTETSGSTMEWALSLLLNHPEILKKAQNEIDDQVGHERLIDESDVAHLPYLRGIINETLRMYPPAPLLAPHESSEDCSVGGYHIPRATMLYINIWAIQNDPKIWAHPRKFDPDRFNRLESENYKFNLMPFGLGRRGCPGEGLGLRMVGLVLGSLIQCFEWERPSDELVDMTEGIAVTMPKAQHLHAKCRPRPIIRLSLQLVVGLPLTVCPVVSAMALLHSVSVTWGQAERAFYRVLSAPISVISLPFAPSRTVHRHTMSPPCANSYYAIVFYYLVGFNLLGMILSSSVDSRDFDYQQRPVLLPLYISPMNSTHQRVLDRDHRLRHLQNLDKPHSSNARMRLHDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVECGNHQDPRFQPELSSTYQPVKCNVDCNCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELVPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGVVSNSFSLCYGGMDIGGGAMVLGGISSPHGMLWDGNSPYYNIELKEIHVAGKPLKLNPSTFNGKYGAILDSGTTYAYFPEKAYYAFKDAIMKKISFLKQINGPDPNFKDICFSGAGRDVTELSKVFPEVDMVFANGQKISLSPENYLFRHTKVSRAYCLGIFKNRNDQTTLLGGMAKFPWIYFFRVKLHGFFPSAGIIVRNTLVTYDRENTTIGFWKTNCSELWKNLHYLSPAPPPAPLPSYGQNTSKEIPPPGSPTGPFLSGEFQVGVITFNMMLHVNKSSVKLNITELAEVIADELEVIMNLESNLFTVHVISCRLSTLVHVLNFTSREADFFIRWAIFPADSAGYISNSTAMDIISRLKERGLQLPDKFGSYQLVELNVEPPLKKTWMEQHFWSVMTIGVAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGVVGPEQELQPL 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22690699 22701369 - Lsi04G015050.1 Lsi04g01505 661554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01505 1254 Pfam Xylanase inhibitor C-terminal 849 984 IPR032799 -
Lsi04g01505 1254 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 607 984 - -
Lsi04g01505 1254 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 1005 1073 - -
Lsi04g01505 1254 SUPERFAMILY Acid proteases 665 1034 IPR021109 -
Lsi04g01505 1254 Gene3D Acid Proteases 838 1035 IPR021109 -
Lsi04g01505 1254 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 684 695 IPR001969 GO:0004190|GO:0006508
Lsi04g01505 1254 PANTHER ASPARTYL PROTEASES 607 984 IPR001461 GO:0004190|GO:0006508
Lsi04g01505 1254 Gene3D Cytochrome P450 37 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 Coils Coil 163 183 - -
Lsi04g01505 1254 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 CDD pepsin_A_like_plant 668 1029 IPR034161 -
Lsi04g01505 1254 Pfam Xylanase inhibitor N-terminal 669 833 IPR032861 -
Lsi04g01505 1254 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Lsi04g01505 1254 PANTHER ASPARTYL PROTEASES 1005 1073 IPR001461 GO:0004190|GO:0006508
Lsi04g01505 1254 Pfam Cytochrome P450 44 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 Gene3D Acid Proteases 650 832 IPR021109 -
Lsi04g01505 1254 SUPERFAMILY Cytochrome P450 43 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01505 1254 ProSiteProfiles Peptidase family A1 domain profile. 669 1025 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01505 - - - cmos:111442809 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00584 Lsi-Chr2:5230265 Lsi04g01505 Lsi-Chr4:22690699 8.32E-12 dispersed
Lsi04g01505 Lsi-Chr4:22690699 Lsi04g02368 Lsi-Chr4:30823262 2.09E-175 dispersed
Lsi05g00554 Lsi-Chr5:6867175 Lsi04g01505 Lsi-Chr4:22690699 3.53E-10 dispersed
Lsi10g01210 Lsi-Chr10:16379342 Lsi04g01505 Lsi-Chr4:22690699 4.77E-45 dispersed
Lsi04g01505 Lsi-Chr4:22690699 Lsi04g01506 Lsi-Chr4:22701401 0 tandem
Lsi04g01419 Lsi-Chr4:21949301 Lsi04g01505 Lsi-Chr4:22690699 2.21E-28 transposed
Lsi10g00541 Lsi-Chr10:7768142 Lsi04g01505 Lsi-Chr4:22690699 0 transposed
Lsi01g00942 Lsi-Chr1:7626212 Lsi04g01505 Lsi-Chr4:22690699 4.61E-153 wgd
Lsi04g01505 Lsi-Chr4:22690699 Lsi08g01509 Lsi-Chr8:23190408 3.18E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g685 . . . . . . . . . . Cma01g01801 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01505 Csa04g02460 . . . . . . . . . . . . . . . . . . . Bhi09g03251 . . . . . . Cla05g02089 . . . . . . . Csa02g01911 Chy07g00174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01505 Lsi_Chr04 FPKM 3.187943 2.530896 5.250057 4.852675 1.373136 0.0 0.719593 0.892161 1.594509 1.374977