Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01506 ATGGCAGGGAATTACCCACTGGATCATTATGCCCTCCACATTGTTATCGCCTCATTTGTCTGTGCCCCACTGCGAATTCGAAACCTCCCACCGAGCCCATTTCTTTCTCTACCGATTATAGGCCAACTCTACCTCCTTAAAAGCCCTCTCCACCGGACTCTATCGGAAATCTCACGCCGCCATGGCCCAATCCTCTTCTTCCGGTTCGGTTTCCGCCCAGTCCTGGTCGTTTCATCTCCGTCGGCCGTCGAGGAGTGTCTCTCCAAAAACGACGTCGTCTTCGCCAACCGGCCTCGTCTCGTTAGCGGCAAATACCTCGGTTACAATTACACGAGCCTCCTCTGGGCACCGTACGGCGAACATTGGCGAAACCTCCGCCGAATCTCGTCGTTAGAAATCCTTTCCAGCCACCGTCTCCAAACGCTTTCCTGTATTCGCGTGGACGAAGTCCGTATGCTGATCCGGAGGCTATACAACGCCGAAAACGACGTCGTCGATATGAGAACAGAGTTTTTCGAGTTGATGTTCAATATCATGATGAGAATGATCGCTGGAAAACGGTATTACGGGGAAGACGTGGCGACAGATTCAGAGGAGGTGGGGAGATTTCGGGAGATTCAGGAGGAGACGTTTCGATTAAGCAGCAAGACTAATTTGGGGGACTTTTTGAGGATTGTGAAATGGGTTGGATTATCCAAAGGGCTTGAAAATAAATTGAGGGAGTTGCAGATTAAGAGGGATATTTGGATGCAGAGTTTGATTGATGAACATCGAAAGCAAATGAAAAATACTCCTAATTATTCTTCTCTTCAAAGTGATGCTAAAAAAACTATGATTGAAGTTCTCCTCTCCCTGCAACAAAAGGAACCTCACTATTATAAGGACGAGTTTATCAGAGGCCTCATGCTTGTGTTGCTATTAGCAGGAACAGAAGGTTCCATCAATACAATGGAGTGGCTTCTGTCACTATTACTCAACCATCCAGACTGTCTTCAACGGGCCCAAATGGAAATCGACGACGTCGTGGGAAGATCCAATCGGATCCTGGAGGAATCGGATCTGGCCCATCTTCCTTACCTCCGTAGCCTAATCCACGAGACTCTTCGAATGTACCCACCCGGCCCATTATTGATTCCCCACGAATCATCGGAGGATTGCCACGTCGGAGGGTACCGGGTCCCAGCTGGCACAATGCTATTCGTCAACGTGTGGGCGATCCAAAACGATCCCACCGTATGGGTGGAGCCTGGAAAATTCAAGCCGGACAGATTTGGAAGCGAGGGAGAGGGGTTCAAGTGGATGCCATTTGGGGCCGGGAGGAGGAGGTGTCCCGGCGAGGGCTTGGGGCTGCGCGTCGTTGGATTGACCGTTGGATCGCTGATTCAGTGCTTTGAATGGGAGTCAGTGGGCGGAGAATCTATTGATATGAGGGAAGGCGGTGGACTGACCTTGCCCAAAGCCCTTCCCCTCCACGCACTTTGCCGACCCCGTTCAAATGCCGCACAGCAGCTTCTTCACAAGATTAGAAACCTTCCGCCCACACCTTTCCCTTCGCTTCCAATCATCGGCCATCTCCACCTCTTGAAGAAACCCATCCACCGGACTTTGGCGGAGATCTCAAACCGCTACGGTCCAGTTGTGTTTCTCCGGTTCGGGTCACGCCAAGTTCTCGTGGTATCGTCTCCTTCCGCAGCTGAAGAATGTTTGACCAAGAACGACGTCGTGTTTGCGAATCGGCCTCGTCTCATTATATCCAAGTGGTTCGGTTACAACAACACGAATCTTGTATGGTCTTCTTATGGGGACCACTGGCGGAACCTCCGCCGAATCTCCACCGTTGAAGTCTTGTCCACTCATCGCCTTCAAATGCTCTCAACCGTCCGCCTCGAAGAGGTCAAGTCTTTGATTCGAAAGCTCGCGAATGGTGAAAACCAAGTGCATAACATGAAGAATGCGTTTTTTGATCTAACTTATAACGTAATGTTGAGGATGCTCGTCGGAAAGCGGTTTTACGGTGAGGACGTGGATGATGCTGACGAGGCAAAGAGATTTAGACAGCTACAGGCTGAGTCAACTCAATTGGGTGGTAAGTCAAATTTACGAGACTTTATCCCACTCATATCGTGGCTGGGATTTGGGTCGACCATAGAGAATAAGATAATGGAATGTCACAAGAGAAGAGACGCTTTCATCCAGAATTTGATTGACCAACATAAAAAAAGAGTTGTTGATCAAACTGAAACCGATAATTTAGTTGGTGATGGAAGGAAGAAGACGATGATTGAAGTATTATTAGAACTACAAGAGTACGAACCTGAGCAGTATGATGATGAAACTATCAAAGCCCTATTGTTGGTTTTGTTGGCTGCAGGTACAGAAACATCAGTGAGCACAATGGAATGGGCCCTGTCTCTTATGTTGAACGATCCTGAAGTTTTAAAGAAAATGCAAATTGAAATTGACAATCAAGTTGGCCACGACCGTTTGATTGACGAATCTGACGTGGCAGACCTTCCTAGCCTACGTGGCATCATCAACGAGACCTTACGAATGTACCCTCCAGCTCCATTGATGGTACCTCATGAGTCATCAAAAGACTGTACCGTTGGAGGGAATCATGTCCCACGTGGCACTATGTTGTACGTGAATTTATGGGCCATTCATAACGACCCTGAGATTTGGGCTCACCCAAAAAAGTTCAATCCAAATAGATTTGAGAGGTTTGAAAGTGAAAAGTATGGGTTCAATCTGATGCCATTCGGGTCGGGTAGAAGAGGGTGTCCAGGAGAGGGATTGGGCCTTCGAGTGATTGGGCTAGTATTGGGCTCACTGATCCAATGTTTTGAATGGGAGCGTCCTGGTGAAGAGTTGGTGGATATGACAGAAGGCATTGGAGTCTCTATGTCTAAGGCCCAATGCTTGCAAGCTAAATGTAGGTCTCGACCCATCGTTCATCGTCTTCATCTTTCTCATGCCAAATCCAACCCACGAGCAATTGATTGA 3003 48.32 MAGNYPLDHYALHIVIASFVCAPLRIRNLPPSPFLSLPIIGQLYLLKSPLHRTLSEISRRHGPILFFRFGFRPVLVVSSPSAVEECLSKNDVVFANRPRLVSGKYLGYNYTSLLWAPYGEHWRNLRRISSLEILSSHRLQTLSCIRVDEVRMLIRRLYNAENDVVDMRTEFFELMFNIMMRMIAGKRYYGEDVATDSEEVGRFREIQEETFRLSSKTNLGDFLRIVKWVGLSKGLENKLRELQIKRDIWMQSLIDEHRKQMKNTPNYSSLQSDAKKTMIEVLLSLQQKEPHYYKDEFIRGLMLVLLLAGTEGSINTMEWLLSLLLNHPDCLQRAQMEIDDVVGRSNRILEESDLAHLPYLRSLIHETLRMYPPGPLLIPHESSEDCHVGGYRVPAGTMLFVNVWAIQNDPTVWVEPGKFKPDRFGSEGEGFKWMPFGAGRRRCPGEGLGLRVVGLTVGSLIQCFEWESVGGESIDMREGGGLTLPKALPLHALCRPRSNAAQQLLHKIRNLPPTPFPSLPIIGHLHLLKKPIHRTLAEISNRYGPVVFLRFGSRQVLVVSSPSAAEECLTKNDVVFANRPRLIISKWFGYNNTNLVWSSYGDHWRNLRRISTVEVLSTHRLQMLSTVRLEEVKSLIRKLANGENQVHNMKNAFFDLTYNVMLRMLVGKRFYGEDVDDADEAKRFRQLQAESTQLGGKSNLRDFIPLISWLGFGSTIENKIMECHKRRDAFIQNLIDQHKKRVVDQTETDNLVGDGRKKTMIEVLLELQEYEPEQYDDETIKALLLVLLAAGTETSVSTMEWALSLMLNDPEVLKKMQIEIDNQVGHDRLIDESDVADLPSLRGIINETLRMYPPAPLMVPHESSKDCTVGGNHVPRGTMLYVNLWAIHNDPEIWAHPKKFNPNRFERFESEKYGFNLMPFGSGRRGCPGEGLGLRVIGLVLGSLIQCFEWERPGEELVDMTEGIGVSMSKAQCLQAKCRSRPIVHRLHLSHAKSNPRAID 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22701401 22707958 - Lsi04G015060.1 Lsi04g01506 661555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01506 1000 PANTHER CYTOCHROME P450 82C3-RELATED 504 987 - -
Lsi04g01506 1000 PANTHER CYTOCHROME P450 82C3-RELATED 16 502 - -
Lsi04g01506 1000 Coils Coil 632 652 - -
Lsi04g01506 1000 PANTHER CYTOCHROME P450 81E8 504 987 - -
Lsi04g01506 1000 PANTHER CYTOCHROME P450 81E8 16 502 - -
Lsi04g01506 1000 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 920 929 IPR017972 GO:0005506|GO:0016705
Lsi04g01506 1000 PRINTS E-class P450 group I signature 799 825 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 927 950 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 842 860 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 540 559 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 883 907 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 779 796 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 656 674 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 564 585 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS E-class P450 group I signature 917 927 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS P450 superfamily signature 790 807 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS P450 superfamily signature 843 854 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 PRINTS P450 superfamily signature 918 927 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 SUPERFAMILY Cytochrome P450 30 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Lsi04g01506 1000 Gene3D Cytochrome P450 506 988 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 Gene3D Cytochrome P450 25 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 Pfam Cytochrome P450 513 967 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 Pfam Cytochrome P450 31 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01506 1000 SUPERFAMILY Cytochrome P450 512 981 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01506 - - - csv:101207735 838.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01506 Lsi08g01509 CCT
Lsi04g01506 Lsi08g01509 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00544 Lsi-Chr4:5002426 Lsi04g01506 Lsi-Chr4:22701401 8.89E-06 dispersed
Lsi04g01506 Lsi-Chr4:22701401 Lsi04g01608 Lsi-Chr4:23598781 0 dispersed
Lsi09g00351 Lsi-Chr9:3660512 Lsi04g01506 Lsi-Chr4:22701401 1.41E-61 dispersed
Lsi04g01505 Lsi-Chr4:22690699 Lsi04g01506 Lsi-Chr4:22701401 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g687 . . . . Bpe02g00445 . . . . . . . . . . . . . . . . . . . Cla08g01605 . . . . . . . . . . Lsi04g01506 Csa04g02458 . Cme03g02084 . . . . . . . . . . . . . . . . Cpe02g00207 . . . . . . . Cla05g02088 . . . . . . Lsi08g01509 . Chy07g00172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01506 Lsi_Chr04 FPKM 21.062651 22.97677 1398.25769 1366.672363 7859.464355 8921.257812 7339.955078 66.95079 66.860329 59.7808