Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01508 ATGGGTTCATGTGAGGTAGCGGTGGTAGCAATGAGCATGGCAAAAAGCGAATCTCAGTTTCAGGATCTAAGGAGGCAGCTTAGGGCATTTGAAGGCGATTCATCGGAGATTATCACGCTCTGCGAGGCGGAAAATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAAGTGCTTGTGCGCAAGCAATTGTTCTTGCTCCACCAGCAGTGCAATTCCTCTGCAACGTCCGCGGAACTTTTACGCAGAAAGAATCGGCGTGGTTCTGTGATTCAACAGGTTAATCAGCCACTGCAATTGTGTTTGCTTTCTCCGGCGAGCTCTGAACATTTAAGAGGAACGTTCTCCCCCAATTTGTATCCACTGGCAATCCTCTCCCTGATTGAGGCCGTTCCGAGTTCTTCCGACGAAAACCAACCGCCTCTGCTTTTTCCAGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCCGGAGTGCCCTCTTTCCCACCAATCACTAGAAATCTCGTCGATTGTTCCTGACGGCGATAACAGCGGTCTTGGAAACCGGCGAACCCTCGGAGTTGCCGGGCAAAAACTTGGGCTGGGCCAACCAATGTGGGGCGTGGCCACCCGAAAAGCCGCTCTCTTTTTAACTTTACACTGTGTCATTGCGATACATACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAACGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCACTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGCAAGCGCAGTGGAGATTCACATTGATTGCTCAAGAGACTTATGAGTTCAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAATCTAAGAAGCATCCGTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTTTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGCAAGCGCAGTGGAGATTCACATTGATTGCTCAAGAGACTTATGAGTTCAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAATCTAAGAAGCATCCGTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTTTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1938 43.09 MGSCEVAVVAMSMAKSESQFQDLRRQLRAFEGDSSEIITLCEAENVEKILEETLRKVLVRKQLFLLHQQCNSSATSAELLRRKNRRGSVIQQVNQPLQLCLLSPASSEHLRGTFSPNLYPLAILSLIEAVPSSSDENQPPLLFPASSDHLGATFLPNLSPQATPECPLSHQSLEISSIVPDGDNSGLGNRRTLGVAGQKLGLGQPMWGVATRKAALFLTLHCVIAIHTDPRRRPLPDYIGRVQNDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRQAQWRFTLIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVVEMEAEILKSLEFELGNPTIKTFLRQAQWRFTLIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22713118 22720058 + Lsi04G015080.1 Lsi04g01508 661557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01508 645 Coils Coil 13 33 - -
Lsi04g01508 645 Pfam Cyclin, C-terminal domain 505 632 IPR004367 -
Lsi04g01508 645 Pfam Cyclin, C-terminal domain 349 476 IPR004367 -
Lsi04g01508 645 Gene3D - 234 347 - -
Lsi04g01508 645 ProSitePatterns Cyclins signature. 251 282 IPR006671 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 227 346 IPR036915 -
Lsi04g01508 645 CDD CYCLIN 349 444 IPR013763 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 349 478 IPR036915 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 505 634 IPR036915 -
Lsi04g01508 645 Pfam Cyclin, N-terminal domain 228 346 IPR006671 -
Lsi04g01508 645 SMART Cyclin_C_2 349 476 IPR004367 -
Lsi04g01508 645 SMART Cyclin_C_2 505 632 IPR004367 -
Lsi04g01508 645 SMART cyclin_7 256 340 IPR013763 -
Lsi04g01508 645 SMART cyclin_7 353 445 IPR013763 -
Lsi04g01508 645 SMART cyclin_7 509 601 IPR013763 -
Lsi04g01508 645 CDD CYCLIN 250 339 IPR013763 -
Lsi04g01508 645 PANTHER CYCLIN-A3-1-RELATED 226 486 - -
Lsi04g01508 645 PANTHER CYCLIN-A3-1-RELATED 485 643 - -
Lsi04g01508 645 PANTHER CYCLINS 226 486 IPR039361 -
Lsi04g01508 645 Gene3D - 231 472 - -
Lsi04g01508 645 CDD CYCLIN 505 600 IPR013763 -
Lsi04g01508 645 PANTHER CYCLINS 485 643 IPR039361 -
Lsi04g01508 645 Gene3D - 492 637 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01508 Lsi08g01505 CCT
Lsi04g01508 Lsi08g01505 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01508 Lsi-Chr4:22713118 Lsi08g00456 Lsi-Chr8:12228253 1.41E-38 dispersed
Lsi03g00554 Lsi-Chr3:6711122 Lsi04g01508 Lsi-Chr4:22713118 2.23E-49 wgd
Lsi04g01508 Lsi-Chr4:22713118 Lsi08g01505 Lsi-Chr8:23165205 3.34E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01508 K06627 - csv:101207493 503.827