Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01508 ATGGGTTCATGTGAGGTAGCGGTGGTAGCAATGAGCATGGCAAAAAGCGAATCTCAGTTTCAGGATCTAAGGAGGCAGCTTAGGGCATTTGAAGGCGATTCATCGGAGATTATCACGCTCTGCGAGGCGGAAAATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAAGTGCTTGTGCGCAAGCAATTGTTCTTGCTCCACCAGCAGTGCAATTCCTCTGCAACGTCCGCGGAACTTTTACGCAGAAAGAATCGGCGTGGTTCTGTGATTCAACAGGTTAATCAGCCACTGCAATTGTGTTTGCTTTCTCCGGCGAGCTCTGAACATTTAAGAGGAACGTTCTCCCCCAATTTGTATCCACTGGCAATCCTCTCCCTGATTGAGGCCGTTCCGAGTTCTTCCGACGAAAACCAACCGCCTCTGCTTTTTCCAGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCCGGAGTGCCCTCTTTCCCACCAATCACTAGAAATCTCGTCGATTGTTCCTGACGGCGATAACAGCGGTCTTGGAAACCGGCGAACCCTCGGAGTTGCCGGGCAAAAACTTGGGCTGGGCCAACCAATGTGGGGCGTGGCCACCCGAAAAGCCGCTCTCTTTTTAACTTTACACTGTGTCATTGCGATACATACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAACGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCACTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGCAAGCGCAGTGGAGATTCACATTGATTGCTCAAGAGACTTATGAGTTCAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAATCTAAGAAGCATCCGTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTTTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGCAAGCGCAGTGGAGATTCACATTGATTGCTCAAGAGACTTATGAGTTCAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAATCTAAGAAGCATCCGTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTTTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1938 43.09 MGSCEVAVVAMSMAKSESQFQDLRRQLRAFEGDSSEIITLCEAENVEKILEETLRKVLVRKQLFLLHQQCNSSATSAELLRRKNRRGSVIQQVNQPLQLCLLSPASSEHLRGTFSPNLYPLAILSLIEAVPSSSDENQPPLLFPASSDHLGATFLPNLSPQATPECPLSHQSLEISSIVPDGDNSGLGNRRTLGVAGQKLGLGQPMWGVATRKAALFLTLHCVIAIHTDPRRRPLPDYIGRVQNDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRQAQWRFTLIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVVEMEAEILKSLEFELGNPTIKTFLRQAQWRFTLIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22713118 22720058 + Lsi04G015080.1 Lsi04g01508 661557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01508 645 Coils Coil 13 33 - -
Lsi04g01508 645 Pfam Cyclin, C-terminal domain 505 632 IPR004367 -
Lsi04g01508 645 Pfam Cyclin, C-terminal domain 349 476 IPR004367 -
Lsi04g01508 645 Gene3D - 234 347 - -
Lsi04g01508 645 ProSitePatterns Cyclins signature. 251 282 IPR006671 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 227 346 IPR036915 -
Lsi04g01508 645 CDD CYCLIN 349 444 IPR013763 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 349 478 IPR036915 -
Lsi04g01508 645 SUPERFAMILY Cyclin-like 505 634 IPR036915 -
Lsi04g01508 645 Pfam Cyclin, N-terminal domain 228 346 IPR006671 -
Lsi04g01508 645 SMART Cyclin_C_2 349 476 IPR004367 -
Lsi04g01508 645 SMART Cyclin_C_2 505 632 IPR004367 -
Lsi04g01508 645 SMART cyclin_7 256 340 IPR013763 -
Lsi04g01508 645 SMART cyclin_7 353 445 IPR013763 -
Lsi04g01508 645 SMART cyclin_7 509 601 IPR013763 -
Lsi04g01508 645 CDD CYCLIN 250 339 IPR013763 -
Lsi04g01508 645 PANTHER CYCLIN-A3-1-RELATED 226 486 - -
Lsi04g01508 645 PANTHER CYCLIN-A3-1-RELATED 485 643 - -
Lsi04g01508 645 PANTHER CYCLINS 226 486 IPR039361 -
Lsi04g01508 645 Gene3D - 231 472 - -
Lsi04g01508 645 CDD CYCLIN 505 600 IPR013763 -
Lsi04g01508 645 PANTHER CYCLINS 485 643 IPR039361 -
Lsi04g01508 645 Gene3D - 492 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01508 K06627 CCNA; cyclin-A - csv:101207493 503.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01508 Lsi08g01505 CCT
Lsi04g01508 Lsi08g01505 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01508 Lsi-Chr4:22713118 Lsi08g00456 Lsi-Chr8:12228253 1.41E-38 dispersed
Lsi03g00554 Lsi-Chr3:6711122 Lsi04g01508 Lsi-Chr4:22713118 2.23E-49 wgd
Lsi04g01508 Lsi-Chr4:22713118 Lsi08g01505 Lsi-Chr8:23165205 3.34E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g693 . Blo12g00976 Bda01g00581 Bda03g00194 Bpe02g00444 Bpe04g00165 Bma04g00147 Bma01g02257 Cmo05g00159 Cmo12g00518 Cma01g01803 Cma09g00270 Car01g01408 Car12g00532 Sed10g1978 Cpe06g00185 Cpe07g00503 Bhi04g00390 Tan02g0995 Cmetu01g1482 . Hepe08g1310 . Lcy13g2114 Cla08g01600 Cam08g2100 Cec08g1681 Cco08g1812 Clacu08g1785 . Cre08g1567 . . Cone17ag0869 Cone20ag0217 Lsi04g01508 Csa04g02456 . Cme03g02080 . . . Bda01g01560 . Bpe05g00036 . Bma05g00047 . Cmo01g01859 Cmo09g00266 Cma12g00577 Cma05g00158 Car05g00137 Car09g00224 Cpe11g00133 Cpe02g00206 Bhi09g03262 . . . Hepe01g1808 . . Cla05g02086 Cam05g2238 Cec05g2258 Cco05g2298 Clacu05g2234 Cmu05g2098 Cre05g2223 Lsi08g01505 Csa02g01916 Chy07g00171 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00138 . 12 314 Core Cell Cycle Gene Families AT3G48750 82.8 6.1e-148 520.4
Lsi04g02422 . 11 320 Core Cell Cycle Gene Families AT3G48750 51.1 1.2e-90 330.1
Lsi11g00111 . 1421 1584 Core Cell Cycle Gene Families AT3G48750 51.8 3.2e-48 189.1
Lsi01g01645 . 658 1027 Core Cell Cycle Gene Families AT3G54180 68.7 1.0e-137 486.5
Lsi04g02422 . 11 322 Core Cell Cycle Gene Families AT3G54180 63.6 4.2e-115 411.4
Lsi04g00138 . 14 310 Core Cell Cycle Gene Families AT3G54180 52.9 7.9e-90 327.4
Lsi11g00111 . 1422 1585 Core Cell Cycle Gene Families AT3G54180 63.5 6.8e-57 218.0
Lsi01g01645 . 658 1027 Core Cell Cycle Gene Families AT2G38620 57.8 1.5e-107 386.0
Lsi04g02422 . 11 322 Core Cell Cycle Gene Families AT2G38620 55.1 2.2e-90 328.9
Lsi11g00111 . 1467 1585 Core Cell Cycle Gene Families AT2G38620 73.1 8.5e-50 194.1
Lsi04g02422 . 1 320 Core Cell Cycle Gene Families AT1G76540 81.3 2.3e-153 538.5
Lsi01g01645 . 656 1022 Core Cell Cycle Gene Families AT1G76540 53.1 3.7e-103 371.7
Lsi04g00138 . 1 310 Core Cell Cycle Gene Families AT1G76540 50.9 8.6e-92 334.0
Lsi11g00111 . 1398 1585 Core Cell Cycle Gene Families AT1G76540 72.3 3.1e-73 272.3
Lsi04g02422 . 8 320 Core Cell Cycle Gene Families AT1G20930 85.3 7.7e-157 550.1
Lsi01g01645 . 656 1025 Core Cell Cycle Gene Families AT1G20930 54.2 6.2e-106 380.9
Lsi04g00138 . 12 310 Core Cell Cycle Gene Families AT1G20930 53.4 1.2e-93 340.1
Lsi11g00111 . 1426 1585 Core Cell Cycle Gene Families AT1G20930 81.3 2.1e-74 276.2
Lsi10g00941 . 1 504 Core Cell Cycle Gene Families AT5G10270 72.9 9.9e-207 716.5
Lsi03g01376 . 1 409 Core Cell Cycle Gene Families AT5G10270 62.7 1.3e-158 556.6
Lsi05g00144 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 1.3e-97 354.0
Lsi05g01501 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.8e-97 352.4
Lsi02g00524 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 8.4e-97 351.3
Lsi08g00053 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 7.1e-96 348.2
Lsi11g00052 . 149 465 Core Cell Cycle Gene Families AT5G10270 52.1 1.2e-95 347.4
Lsi11g00478 CCT,ECH 736 1054 Core Cell Cycle Gene Families AT5G10270 51.3 7.8e-95 344.7
Lsi02g00092 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.4 1.1e-91 334.3
Lsi10g00900 . 124 338 Core Cell Cycle Gene Families AT5G10270 55.5 2.8e-68 256.5
Lsi10g00941 . 65 503 Core Cell Cycle Gene Families AT5G64960 72.5 3.6e-171 598.2
Lsi03g01376 . 65 462 Core Cell Cycle Gene Families AT5G64960 56.6 6.9e-122 434.5
Lsi05g00144 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 1.2e-81 300.8
Lsi02g00524 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 3.4e-81 299.3
Lsi11g00052 . 203 465 Core Cell Cycle Gene Families AT5G64960 52.9 2.2e-80 296.6
Lsi05g01501 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.8e-80 295.8
Lsi08g00053 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.9 4.2e-79 292.4
Lsi10g00900 . 829 1102 Core Cell Cycle Gene Families AT5G64960 51.6 7.2e-79 291.6
Lsi06g01303 . 4 398 Core Cell Cycle Gene Families AT1G73690 72.9 9.0e-163 570.1
Lsi06g01303 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.1e-155 545.4
Lsi06g01303 . 8 398 Core Cell Cycle Gene Families AT1G18040 74.4 1.4e-163 572.8
Lsi01g01935 . 29 234 Core Cell Cycle Gene Families AT5G63610 87.9 3.1e-101 365.9
Lsi01g01934 . 1 154 Core Cell Cycle Gene Families AT5G63610 60.9 4.6e-41 166.0
Lsi11g00250 CCT 237 749 Core Cell Cycle Gene Families AT4G28980 58.7 2.0e-169 592.4
Lsi08g00456 . 5 499 Core Cell Cycle Gene Families AT1G44110 60.8 7.5e-153 537.3
Lsi08g01152 . 195 463 Core Cell Cycle Gene Families AT1G44110 50.9 2.1e-70 263.5
Lsi08g01152 . 70 475 Core Cell Cycle Gene Families AT5G25380 51.9 1.8e-95 346.7
Lsi08g00456 . 217 492 Core Cell Cycle Gene Families AT5G25380 55.4 3.3e-81 299.3
Lsi02g02759 . 223 469 Core Cell Cycle Gene Families AT5G25380 52.0 2.7e-75 279.6
Lsi04g01508 CCT,ECH 232 479 Core Cell Cycle Gene Families AT5G25380 52.0 1.6e-67 253.8
Lsi08g01152 . 188 413 Core Cell Cycle Gene Families AT5G11300 64.6 5.8e-72 268.5
Lsi08g00456 . 208 437 Core Cell Cycle Gene Families AT5G11300 56.5 4.6e-69 258.8
Lsi04g01508 CCT,ECH 231 423 Core Cell Cycle Gene Families AT5G11300 55.4 4.6e-53 205.7
Lsi03g00554 . 119 285 Core Cell Cycle Gene Families AT5G11300 53.6 1.0e-44 177.9
Lsi02g02759 . 189 469 Core Cell Cycle Gene Families AT1G15570 54.7 6.1e-91 331.6
Lsi08g00456 . 218 496 Core Cell Cycle Gene Families AT1G15570 54.1 2.4e-79 293.1
Lsi04g01508 CCT,ECH 228 476 Core Cell Cycle Gene Families AT1G15570 52.6 1.2e-70 264.2
Lsi08g00456 . 218 497 Core Cell Cycle Gene Families AT1G80370 55.4 1.0e-80 297.7
Lsi04g01508 CCT,ECH 231 484 Core Cell Cycle Gene Families AT1G80370 51.6 1.2e-68 257.7
Lsi08g01505 CCT,ECH 5 362 Core Cell Cycle Gene Families AT5G43080 57.7 1.3e-109 393.3
Lsi04g01508 CCT,ECH 231 487 Core Cell Cycle Gene Families AT5G43080 63.4 3.0e-93 339.0
Lsi08g00456 . 219 499 Core Cell Cycle Gene Families AT5G43080 51.2 1.4e-79 293.5
Lsi08g01505 CCT,ECH 1 362 Core Cell Cycle Gene Families AT1G47210 57.2 2.3e-115 412.5
Lsi04g01508 CCT,ECH 226 487 Core Cell Cycle Gene Families AT1G47210 62.2 2.2e-94 342.8
Lsi08g01505 CCT,ECH 78 362 Core Cell Cycle Gene Families AT1G47220 53.9 6.2e-85 311.2
Lsi04g01508 CCT,ECH 226 488 Core Cell Cycle Gene Families AT1G47220 57.4 6.4e-82 301.2
Lsi08g01505 CCT,ECH 1 362 Core Cell Cycle Gene Families AT1G47230 53.9 1.5e-106 383.3
Lsi04g01508 CCT,ECH 230 487 Core Cell Cycle Gene Families AT1G47230 66.0 3.0e-96 349.0
Lsi03g00554 . 66 351 Core Cell Cycle Gene Families AT1G47230 54.5 1.2e-79 293.9
Lsi08g00456 . 220 501 Core Cell Cycle Gene Families AT1G47230 50.2 2.7e-76 282.7
Lsi01g00535 . 170 338 Core Cell Cycle Gene Families AT5G06150 53.8 1.9e-44 176.8
Lsi01g00535 . 171 403 Core Cell Cycle Gene Families AT3G11520 51.1 3.1e-59 226.1
Lsi10g01118 . 114 529 Core Cell Cycle Gene Families AT2G26760 50.1 1.4e-99 360.1
Lsi01g00535 . 8 446 Core Cell Cycle Gene Families AT2G17620 59.9 4.6e-128 454.9
Lsi01g00535 . 5 403 Core Cell Cycle Gene Families AT4G35620 58.2 4.8e-105 378.3
Lsi04g01804 . 1 406 Core Cell Cycle Gene Families AT1G20610 59.2 1.1e-126 450.3
Lsi01g00535 . 1 446 Core Cell Cycle Gene Families AT1G20610 56.9 2.6e-123 439.1
Lsi04g01804 . 1 303 Core Cell Cycle Gene Families AT1G76310 56.8 4.9e-85 311.6
Lsi01g00535 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 7.9e-83 304.3
Lsi02g01730 . 1 329 Core Cell Cycle Gene Families AT1G70210 65.0 3.6e-112 401.7
Lsi05g00231 . 5 335 Core Cell Cycle Gene Families AT4G34160 51.3 9.7e-82 300.8
Lsi08g01495 CCT,ECH 47 322 Core Cell Cycle Gene Families AT4G34160 51.2 2.7e-68 256.1
Lsi03g00524 . 61 303 Core Cell Cycle Gene Families AT4G34160 50.6 2.5e-61 233.0
Lsi01g00802 . 56 301 Core Cell Cycle Gene Families AT5G65420 53.4 1.9e-63 239.6
Lsi08g01007 . 65 264 Core Cell Cycle Gene Families AT5G65420 55.9 5.7e-60 228.0
Lsi08g01007 . 60 238 Core Cell Cycle Gene Families AT5G10440 53.9 1.2e-50 196.8
Lsi01g00802 . 54 259 Core Cell Cycle Gene Families AT5G10440 51.7 3.8e-49 191.8
Lsi01g01011 . 24 236 Core Cell Cycle Gene Families AT5G27620 52.7 1.7e-65 246.5
Lsi04g00009 . 4 844 Core Cell Cycle Gene Families AT3G12280 66.7 0.0e+00 1153.3
Lsi02g02376 . 2 490 Core Cell Cycle Gene Families AT1G02970 59.6 5.8e-159 557.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001075 3 10 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 4 2 2 2 2 3 3 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01508 Lsi_Chr04 FPKM 0.542777 0.419734 5.627192 4.331565 8.762718 9.283643 9.027596 6.038221 5.158428 5.541138