Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01511 ATGGAACCTCACACAATTACTTGGTTCTCTGGTTTCCTCATCTCTCTCTCTCTTCTCTTCACGCTCATCCTTCTTTCCAAGCTCAGAAAAGTAAGCCACACAAAACTTCCACCAAGCCCACCTTCCCTTCCGGTCATCGGTCACCTTCATCTCCTCAAAGACCCTTTCCACCGAGTGCTGCACGATCTCTTCAACAAATACGGTCCAATTCTATCCCTTTCAATCGGCTCCCGTCCGGTGGTGGTTGTCTCCTCCCCAACCGCCGTCCGTGAGTGCTTTACCAAAAACGACATCGTATTCGCCAATCGCCCTCGGTTGCTTTCAGGGAAGTACATCAACTACAATTACACCGCAGTGGGATTTGCCCCCTACGGCCAGCACTGGCGCAACATGCGCCGCATAGCCACGACTGAGCTACTCTCCAACCACCGTCTCAACACGTATCTCAGCATTCGAGTGGAAGAAGTCAAGTTATGGGTAAAGAATTTGTACAAATTCATTATTTGTAGTAGTGGAGATTTTGTTGAAGCGGTGGAAATGAAGTCGAAGTTGAAGGAACTGTCTTTCAACATTGTGATGAGAATGGTTAGTGGGAAACGGTATTTTGGTGTGGAAGTGGAGGATGTGGAGGAAGCGTTGGAATTTAGGGAGATTATGAGGGAGCTTCTTGAATTGAGTGGGGCTACCAATCCGGCGGATTTTTTGCCTATTTTGAGACTCTTTGATTTTCAAGGACTTGAGAAGAGGATGTTGAAAGCCAGTGGGAGAGCTGATGTTTTCTTACAAAAACTCATTGATGAACACAGGGAAAGGAGAGTTTCACGTTGGCCGGAGGAAGAACGTAGAAAAACCATGATTCGATCTTTGCTCTCCTTCCAACAATCTCAACCTCATTATTACTCTGATGATATAATCAAGGGTCATGTTCTGACGATGTTGGCTGCAGGTACGGATACAACTTCAGGAACAATAGAATGGGCGATGTCGCTACTTTTGAATCATCCAACGGTGATGAAGAAAGCTTGGATTGAGATAAGAGATAGCGTTGGAGAGAATCGGATGGTGGAGGAAGGCGATATTAGCAAGCTCAAATATGTGGAAGCCATAATCTACGAAACTCTTCGACTTTTTCCAGCAGCTCCATTGTTGGTCCCACACGAATCCTCTGAAGATTGTAGAATTGAAGGATTTGAGATACCTAAAGGAACAATGTTGATGGTAAATGCATGGGCCATTCATAGGGACCCGAAAGTGTGGGAGGATCCTACTAGCTTCCGACCGGAGAGGTTTCTAAATTGGGAAGAAGCTGCACCTGAATCTTACAAGTGGATACCTTTTGGAATGGGAAGGAGGGCTTGTCCAGGGGCTGCCCTCGCCCAACGAGTCATGGGTTTGACATTAGCCACTTTGATTCATTGCTTTGAATGGGAGAAAGTTGATGAACAACAAATTGACTTGTCTGAAGCAACTGGAATCACTATGCCCAAAGCTAAACCTTTGGTGGCAATGTGTAAACCTCGTACCTCCATGCTTCATTTACTCTCTCATCTTTGA 1554 45.75 MEPHTITWFSGFLISLSLLFTLILLSKLRKVSHTKLPPSPPSLPVIGHLHLLKDPFHRVLHDLFNKYGPILSLSIGSRPVVVVSSPTAVRECFTKNDIVFANRPRLLSGKYINYNYTAVGFAPYGQHWRNMRRIATTELLSNHRLNTYLSIRVEEVKLWVKNLYKFIICSSGDFVEAVEMKSKLKELSFNIVMRMVSGKRYFGVEVEDVEEALEFREIMRELLELSGATNPADFLPILRLFDFQGLEKRMLKASGRADVFLQKLIDEHRERRVSRWPEEERRKTMIRSLLSFQQSQPHYYSDDIIKGHVLTMLAAGTDTTSGTIEWAMSLLLNHPTVMKKAWIEIRDSVGENRMVEEGDISKLKYVEAIIYETLRLFPAAPLLVPHESSEDCRIEGFEIPKGTMLMVNAWAIHRDPKVWEDPTSFRPERFLNWEEAAPESYKWIPFGMGRRACPGAALAQRVMGLTLATLIHCFEWEKVDEQQIDLSEATGITMPKAKPLVAMCKPRTSMLHLLSHL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22748193 22750916 + Lsi04G015110.1 Lsi04g01511 661560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01511 517 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 Gene3D Cytochrome P450 23 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PANTHER CYTOCHROME P450 82C3-RELATED 31 516 - -
Lsi04g01511 517 SUPERFAMILY Cytochrome P450 37 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 Pfam Cytochrome P450 37 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01511 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Lsi04g01511 517 PANTHER - 31 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01511 Lsi-Chr4:22748193 Lsi09g01788 Lsi-Chr9:26616377 0 dispersed
Lsi10g00169 Lsi-Chr10:2729368 Lsi04g01511 Lsi-Chr4:22748193 4.65E-143 dispersed
Lsi10g00170 Lsi-Chr10:2764165 Lsi04g01511 Lsi-Chr4:22748193 4.56E-156 dispersed
Lsi04g01510 Lsi-Chr4:22742692 Lsi04g01511 Lsi-Chr4:22748193 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01511 K13260 - csv:101207002 843.958