Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01515 AAAAATAATCTCTATGAGAGGCTACTTCAGGGTGGTTCGTCTTATGAAGCTATTTTGTCATGGATGTGCGTTGCGATTAAAACCCACCATTGTAGACAGAAACCCCAATTGCAGTCATTGCTTCTTGTTTCTCACAGTTCCACACACCATTCTCCCATAACCGGAGCTCAACACGATTCTCAACTCACATTGAACACACTACCTTTCCAAATGGGAAGCCCTGAGAATCGGGTTGCTTCCGACTCCGCCGATACCACATCCAAGAATGACTCTGAAGACGACGACGACAATGGAGTTCAGAGCCCGCCTTCCCATCCTTGTCCTTTCTCAGAAGGAGAGAAGGTTCTCGCTTTTCATAGCTTCGTCATATATGAAGCTAAGGTACTGAAAACAGAATATCAGTTGAAAGAATGGCGATGTTATGTTCATTACCTTGGATGGAGCAAAACATTTCGTAGTGCAATGAAGACTGGGAAGTTTTGTAGTTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACTGAAGAGAATGTCCAGAAACAGCAGGAACTCAATGAGAAGAGGGGGACTGACAAGAAGGCATCTCGAGCATCCCAGACTAAACCCAAGAGTGTGATAAAGGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAGTGCAATGAATGTTGAAAAGCTTGTGAGCATACAGATTCCAGTTAAACTAAAGAAGCAACTAGTTGATGACAGTGAGTTTGTAACACATCTTGGGAAGCTGGTAAAGCTCCCACGCACACCTAATGTAGAAGATATACTGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGTAACGAAAGATGAATCAGTTGGAGAAATTGTGAAGGGGCTGATTTGTTACTTCGATAAAGCACTACCTGCAATGCTTCTGTACAAAAGCGAACGCCAACAATATGAGGAATTGATCGTCAACGATGTCTCCCCTTCTTCAGTATATGGTGCCGAACACCTTCTACGTCTGTTTGGTAATACTGATTATTTCCTTGTTCTAACTAATGGTCAAAGGGGAGAGGGTAGCCTTTTTGAAGATGGTATGCGTTGTTTTCATAAAATTGCAGTTAGGTTGCCTGAATTGTTGTGTCAAGCCAATATTGAAGAGGAGACTTTGATGGAACTGCAACAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAATGCGTTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGTACCAACAATGCCGATGACTAA 1281 42.15 KNNLYERLLQGGSSYEAILSWMCVAIKTHHCRQKPQLQSLLLVSHSSTHHSPITGAQHDSQLTLNTLPFQMGSPENRVASDSADTTSKNDSEDDDDNGVQSPPSHPCPFSEGEKVLAFHSFVIYEAKVLKTEYQLKEWRCYVHYLGWSKTFRSAMKTGKFCSWDEWVGLDRLLKFTEENVQKQQELNEKRGTDKKASRASQTKPKSVIKGRKRKNDASKEKSAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDILKKYLEYRLKKDVTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVNDVSPSSVYGAEHLLRLFGNTDYFLVLTNGQRGEGSLFEDGMRCFHKIAVRLPELLCQANIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMETSTNNADD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22776799 22788326 + Lsi04G015150.1 Lsi04g01515 661564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01515 426 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 77 344 - -
Lsi04g01515 426 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 77 344 IPR008676 GO:0005634|GO:0006325|GO:0006355
Lsi04g01515 426 SUPERFAMILY Chromo domain-like 99 250 IPR016197 -
Lsi04g01515 426 Coils Coil 371 391 - -
Lsi04g01515 426 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 367 426 - -
Lsi04g01515 426 Pfam MRG 212 350 IPR026541 -
Lsi04g01515 426 Pfam MRG 366 411 IPR026541 -
Lsi04g01515 426 ProSiteProfiles MRG domain profile. 226 424 IPR026541 -
Lsi04g01515 426 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 367 426 IPR008676 GO:0005634|GO:0006325|GO:0006355
Lsi04g01515 426 MobiDBLite consensus disorder prediction 184 200 - -
Lsi04g01515 426 MobiDBLite consensus disorder prediction 73 106 - -
Lsi04g01515 426 MobiDBLite consensus disorder prediction 184 222 - -
Lsi04g01515 426 Gene3D - 93 203 - -
Lsi04g01515 426 Gene3D MRG domain 224 424 IPR038217 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01515 K11339 MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1 - csv:101219247 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00947 Lsi-Chr1:7680970 Lsi04g01515 Lsi-Chr4:22776799 5.75E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01515 Lsi_Chr04 FPKM 1.516883 1.504795 4.313304 3.734915 3.766871 3.295405 3.463602 5.26234 4.25772 4.622572