Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01519 ATGGGAGGTTGGGCCATAGCGGTTCATGGTGGGGCTGGCGTGGATCCTAATCTCCCACTCCATCGCCAAGATGATGCCAAAAAACTTCTTACTCGCTGCCTTGATCTTGGCATCCATGCTCTTCGTTCAAATCATTCTGCCATTGATGTCGTTGAACTCGTCGTTAGAGAATTGGAAACCGATCCCCTGTTCAATTCGGGGCGTGGATCTGCCCTCACAGAGGAGGGTACCGTAGAGATGGAGGCCAGCATCATGGACGGCCCAAAACGGAGATGCGGGGCGGTCTCCGGACTCACCACCGTCAAAAACCCCGTCTCCCTCGCCCGTCTTGTCATGGATAAATCTCCCCATTCGTATCTGGCCTTCTCTGGCGCTGAGAAATTCGCTAGGCAACAGGGTGTGGAACTTGTGAGCAATGACTATTTCATCACCGAAGAAAACGTCGGACTGCTAGAATTAGCCAAAGAAGCCAACAGTATATGGTTGGATCATAGGGTCCCAAGCGAGACGTGTAGCGCGAGCGTGGAGACACCATTGCAAATGAACGGCCTCCCAATCAGCGTGTACGCACCAGAGACGGTGGGGTGCGTGGTGGTGGATAGCGAAGGAAGGTGCGCCGCCGCTACATCCACCGGTGGATTGATAAACAAAAAGATGGGACGCATTGGAGACTCGCCGTTGATCGGATCAGGGACGTACGCGTGTGATGTATGTGGGGTATCGTGCACGGGAGAAGGGGAGGCGATCATTAGAGGGACTTTGGCTAGAGAAGTGGCGGCAGTGATGGAATACAAAGGGTTGGGGCTTCAAGAGGCAGTGAATTACGTGATAGAGGAGAGATTGGACGAAGGCAAGGCGGGATTGATTGCAGTTTCTAGCAATGGGGAAGTGGCGTGTGGGTTCAACACAACCGGGATGTTCAGGGGATGCGCCACGGAGGATGGGTTTATGGAGGTTGGGATTTGGTAA 969 53.66 MGGWAIAVHGGAGVDPNLPLHRQDDAKKLLTRCLDLGIHALRSNHSAIDVVELVVRELETDPLFNSGRGSALTEEGTVEMEASIMDGPKRRCGAVSGLTTVKNPVSLARLVMDKSPHSYLAFSGAEKFARQQGVELVSNDYFITEENVGLLELAKEANSIWLDHRVPSETCSASVETPLQMNGLPISVYAPETVGCVVVDSEGRCAAATSTGGLINKKMGRIGDSPLIGSGTYACDVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQEAVNYVIEERLDEGKAGLIAVSSNGEVACGFNTTGMFRGCATEDGFMEVGIW 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22817533 22819354 - Lsi04G015190.1 Lsi04g01519 661568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01519 322 Pfam Asparaginase 4 322 IPR000246 GO:0016787
Lsi04g01519 322 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 319 IPR029055 -
Lsi04g01519 322 PANTHER PEPTIDASE T2, ASPARAGINASE 2, NUCLEOPHILE AMINOHYDROLASE-RELATED 1 322 - -
Lsi04g01519 322 Gene3D (Glycosyl)asparaginase 193 322 - -
Lsi04g01519 322 PANTHER L-ASPARAGINASE 1 322 IPR000246 GO:0016787
Lsi04g01519 322 CDD Asparaginase_2 5 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01519 K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] - csv:101218064 602.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01519 Lsi-Chr4:22817533 Lsi06g00136 Lsi-Chr6:1299628 2.65E-115 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g718 . Blo12g00971 . Bda03g00198 . . Bma04g00151 Bma01g02261 . . Cma01g01812 . Car01g01414 . . . . . . . . . . . . . . . . . . . . Cone17ag0863 Cone20ag0210 Lsi04g01519 Csa04g02446 . . . . . . . . . . Sed01g2692 Cmo01g01868 . . . . . . Cpe02g00200 Bhi09g03275 Tan01g4733 Cmetu07g1766 . Hepe01g1800 Mch11g0330 . Cla05g02077 Cam05g2227 Cec05g2246 Cco05g2288 Clacu05g2221 Cmu05g2088 Cre05g2212 . . Chy07g00161 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009761 1 1 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01519 Lsi_Chr04 FPKM 16.108494 18.10681 9.523817 8.494845 27.01997 28.096056 26.705278 12.092136 10.371247 8.952466