Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01520 ATGAGAAACTATAGAATGGCGAAACGACATTGTTACCCATTATCAATTGCACATTCGATTTCAGGTCACCAAAACGCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGATTGGAGATGACCATTCCCAACCAAAGCTCGAACCTTTCTCAATTAACGTTAACATCAATTCCCCAAATTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGATGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAATCTCCACAACACTCTCCCACACAATCCCTCTCTAGCTGCAGCTCGCTCCAAGGCGGTTGACTGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCTCTCACCGCCGTTTTGGCTGTTGATTACGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCGGCCAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTCTTCGAAGCTAAAACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAATCCACTTTCCTTTTTGGACTATATTGTAAGACGCCTCAGCCTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCAGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCAACTCGCCGCAAAATACCACGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGGATAAGATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAGAAACGAATGGAAGAATAAACCAAGATTTGGTTTGGTCGACATGTCGTGCAGCTCAAATGGTCGGACTAGGAATGTCGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCTCCGTAG 1056 43.84 MRNYRMAKRHCYPLSIAHSISGHQNASLLLDSLYCFEEEIGDDHSQPKLEPFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNNLHNTLPHNPSLAAARSKAVDWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLSLKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPQLAAKYHDQLLGFLQIDKDKMEDCSRFILEASSRGHRNEWKNKPRFGLVDMSCSSNGRTRNVDIVVSSPETATKKRKIDEQPP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22842315 22845183 - Lsi04G015200.1 Lsi04g01520 661569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01520 351 Gene3D - 205 293 - -
Lsi04g01520 351 SUPERFAMILY Cyclin-like 73 204 IPR036915 -
Lsi04g01520 351 CDD CYCLIN 104 196 IPR013763 -
Lsi04g01520 351 ProSitePatterns Cyclins signature. 104 135 IPR006671 -
Lsi04g01520 351 SMART Cyclin_C_2 206 323 IPR004367 -
Lsi04g01520 351 SMART cyclin_7 109 197 IPR013763 -
Lsi04g01520 351 Pfam Cyclin, N-terminal domain 91 204 IPR006671 -
Lsi04g01520 351 Gene3D - 101 204 - -
Lsi04g01520 351 PANTHER CYCLIN D3.1 PROTEIN 54 341 - -
Lsi04g01520 351 Pfam Cyclin, C-terminal domain 206 302 IPR004367 -
Lsi04g01520 351 PANTHER CYCLINS 54 341 IPR039361 -
Lsi04g01520 351 SUPERFAMILY Cyclin-like 207 299 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01520 K14505 CYCD3; cyclin D3, plant - csv:101218302 579.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01520 Lsi08g01495 CCT
Lsi04g01520 Lsi08g01495 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01520 Lsi-Chr4:22842315 Lsi05g00231 Lsi-Chr5:3074203 2.93E-85 dispersed
Lsi01g00952 Lsi-Chr1:7729034 Lsi04g01520 Lsi-Chr4:22842315 2.10E-79 wgd
Lsi03g00524 Lsi-Chr3:6105614 Lsi04g01520 Lsi-Chr4:22842315 1.19E-75 wgd
Lsi04g01520 Lsi-Chr4:22842315 Lsi08g01495 Lsi-Chr8:23110265 1.82E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012604 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01520 Lsi_Chr04 FPKM 13.584488 12.788744 13.578449 13.100366 55.694668 53.932571 53.728428 7.280513 6.066072 6.682034