Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01526 ATGCCAGCGAGTAGGTGTAGTAAGTACCATGATTGCTCTTTGCCATTTAATTGTGAAGAGAAAGACGAGTACAGAATCAATCGGTTTTCTTTCAGTAAAATGGAAAGTGGCCTTCCCATGCTTAATTGCCTGTTGCAACACACTTTAAGGAGTCTATGTTTGTCTTCAGACTCTTGTAGCTCTACCTCTTCTAAGTGGGTTTATGCCATTTTCTGGAGGATCCTCCCTAGAAACTTTCCTCCTCCCAAGTGGGAGTTTGGTGGGAGTGCTCTTGATCGCTCCAAAGGAAACAAGAGAAACTGGTATGTATTGACAAAGTTGATAATTTTGTTAGATATCTTGAGTGCTTGGGGAGTTTATGAGTTGGTTTATTTCAGGATTCTTGTTTGGGAAGATGGATTTTGTGATTTCCACGAATGTGAAAGAGCAGCAGGTGGGTGTATTACAGGGAGGTTTGGAGTTGATCTCTTCTTCAAAATGTCTCATGAGGTTTACAGTTATGGAGAAGGATTAGTGGGGAAAGTTGGAGCAGATAATGGTCATAAATGGGTTTTCAGAGATAACGCAACTGAAATTGATCCGAACCTCATCTCCTCGTGGAACTCATCCGTTGAGCCTCAACCTCGAGCGTGGGAATCTCAATTTAAATCAGGCATTCAGACAATTGCAGTCATTGCTGTACGAGAAGGCGTAGTTCAACTAGGCTCTTTTGATAAGGTCCCGGAAGATCTCAATTTAGTCATTAATGTACAGAGGAAATTCAGCTACCTGCATAGCATGCCAGGTATCTTTGCGGTTCAAAGGTCCTACCTTCCTAGCCAACATCCATACGTTTTAAAGCCAGATGTCCAGATGATCGAAAACCAGTCTACTGGATTGAAGAGATTGTTCAGCTCTATGCTTGATGAATCTCCCATCAAATCCATCAACTTAGGCTGGAACACCCCACAGCATTCCTTGGCCACTGGATCACCAGTGTGGCCAATCCCACCTCTTCTTCCTTCCACTTCATGTGGCCTTGGAACTTTTAAATCAAAGTTTCCTTCTAATAGCACCCCACCTTGTGAAGTCAATGATCATCCTGACGCAGTTCAACTCATGTCCATTAACCACTCGAATACAACGAAAGCTACCAACTCAGAAGTAAAGATAGAAACCTTGAGCAAGTTAGATGCAGCTCAAGAAACAGAAAAGAAACAAAATTGCTTAAACCCGAGTTTGCGGTTTGAAGATGGGGTGGTGACAGAGTTGGGATTCAGACTTGGAGAGACAACCCAGAATGGTCAAAATCTGAATTAA 1299 42.65 MPASRCSKYHDCSLPFNCEEKDEYRINRFSFSKMESGLPMLNCLLQHTLRSLCLSSDSCSSTSSKWVYAIFWRILPRNFPPPKWEFGGSALDRSKGNKRNWYVLTKLIILLDILSAWGVYELVYFRILVWEDGFCDFHECERAAGGCITGRFGVDLFFKMSHEVYSYGEGLVGKVGADNGHKWVFRDNATEIDPNLISSWNSSVEPQPRAWESQFKSGIQTIAVIAVREGVVQLGSFDKVPEDLNLVINVQRKFSYLHSMPGIFAVQRSYLPSQHPYVLKPDVQMIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLATGSPVWPIPPLLPSTSCGLGTFKSKFPSNSTPPCEVNDHPDAVQLMSINHSNTTKATNSEVKIETLSKLDAAQETEKKQNCLNPSLRFEDGVVTELGFRLGETTQNGQNLN 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22870737 22872533 + Lsi04G015260.1 Lsi04g01526 661575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01526 432 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 125 430 - -
Lsi04g01526 432 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 34 102 - -
Lsi04g01526 432 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 125 430 - -
Lsi04g01526 432 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 156 254 IPR025610 -
Lsi04g01526 432 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 34 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01526 - - - cmo:103493571 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01526 Lsi-Chr4:22870737 Lsi04g02057 Lsi-Chr4:27685708 3.19E-28 dispersed
Lsi04g01525 Lsi-Chr4:22861765 Lsi04g01526 Lsi-Chr4:22870737 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g725 . Blo12g00967 . Bda03g00201 . . . . . . Cma01g01818 Cma09g00256 Car01g01419 . . Cpe06g00177 . . . . . . . . . . . . . . . . . Cone17ag0860 Cone20ag0207 Lsi04g01526 Csa04g02440 . . . Blo18g00705 . Bda01g01602 . . Bma01g00663 . Sed01g2688 Cmo01g01873 Cmo09g00250 . . . Car09g00215 . Cpe02g00196 Bhi09g03283 Tan01g4739 Cmetu10g1109 . . . . Cla05g02071 Cam05g2223 Cec05g2242 Cco05g2283 Clacu05g2216 Cmu05g2083 Cre05g2207 . . Chy07g00157 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003872 2 7 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01526 Lsi_Chr04 FPKM 5.328249 5.581121 5.744915 4.958179 5.677932 4.659011 5.659235 0.737293 0.744398 0.623214