Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01527 ATGGGGACCTTCTCATCCTCCCCGATCATGGCTCTCCTCTTCTTTCTCTTGATAGCTTTATCATCCGCGTCGCCTTCTTCTATCATCCCCGAGAGGACGGACGAGGAGGTCATGGCTCTCTACGACCAGTGGCGTGCCAAGCACGGGAAGCTGCACAACCTCTTGGGAGCAGAGGCCGATAATAGATTCCATATCTTCAAGGACAATCTCAAGTACATCGATGAAATCAACGCCCAAAATTTGCCCTACCGATTAGGTTTGAACGTCTTCGCAGATCTGACCAACGAGGAGTACCGATCCAGGTACTTGGGAGGTAAATTCGCCGCCGGTTCAAGGAGAAACAGGACGAGCAGCCGCTATCAGCCTCGCCTTGGAGATGAACTCCCAGACTCTATCGATTGGAGGGAGAAAGGAGCCGTCGCTCCCGTTAAAGACCAGGGAAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCTGTGGAAGGCATAAACCAGATTGTTACAGGCGACTTGATAGCATTATCTGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAACGGTGGTTTAATGGACTATGCCTTCGAGTTCATCATCAACAATGGCGGCATTGATACTGAAGAAGATTATCCATACAACGGCTTTGATAGTTCCTGCATCCAATATAAGAAAAATGCTAAGGTCGTTTCAATTGATGGTTATGAAGATGTCCCTATAAACAGTGAGAAAGCACTGCAAAAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGAGGCGGTAGAAGTTTCCAGCTATATCAATCGGGTATATTCACTGGCAAGTGTGGGACAGATTTGGACCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGAGGCGTTGATTACTGGATTGTAAGAAACTCATGGGGTGCGAGCTGGGGTGAAAGTGGCTACATCAGGATGCAACGTAATATCGCTTCTCCAAATGGTCTTTGTGGGATTGCAATGGAACCTTCCTACCCAATTAAAAACGGAGCAAACCCACCAAATCCAGGCCCCACTCCTCCAAGTCCGGTGAAACCCCCATCTGTATGCGATGAATATTACACCTGTCCCGCCGCCGAAACTTGCTGCTGTATCTTCGAGTTCTCAAACCTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACTTGCTGTGATGACCATTACAGTTGTTGCCCCCATGACTACCCCATCTGCAACGTCCGTGCTGGAACCTGCTTGAAGGGTAAGAATGACGTTTTCGGAGTGAAGGCGATGAGGCGCACCGCAGCTGCAGCCAGACCATCGTGGGCACATGGAGGTGTGACTGTTGGAAAGAGCAGTGCTTAA 1380 49.42 MGTFSSSPIMALLFFLLIALSSASPSSIIPERTDEEVMALYDQWRAKHGKLHNLLGAEADNRFHIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSRYLGGKFAAGSRRNRTSSRYQPRLGDELPDSIDWREKGAVAPVKDQGSCGSCWAFSTIAAVEGINQIVTGDLIALSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNAKVVSIDGYEDVPINSEKALQKAAAKQVVAVAIEGGGRSFQLYQSGIFTGKCGTDLDHGVNVVGYGSEGGVDYWIVRNSWGASWGESGYIRMQRNIASPNGLCGIAMEPSYPIKNGANPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEFSNLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTAAAARPSWAHGGVTVGKSSA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22877367 22883358 - Lsi04G015270.1 Lsi04g01527 661576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01527 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Lsi04g01527 459 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Lsi04g01527 459 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Lsi04g01527 459 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Lsi04g01527 459 SMART GRAN_2 366 423 IPR000118 -
Lsi04g01527 459 PANTHER CYSTEINE PROTEASE 25 373 - -
Lsi04g01527 459 SUPERFAMILY Cysteine proteinases 33 343 IPR038765 -
Lsi04g01527 459 Gene3D Cysteine proteinases 24 345 - -
Lsi04g01527 459 Pfam Granulin 377 424 IPR000118 -
Lsi04g01527 459 CDD Peptidase_C1A 129 342 IPR039417 -
Lsi04g01527 459 SMART Inhibitor_I29_2 41 98 IPR013201 -
Lsi04g01527 459 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Lsi04g01527 459 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 373 - -
Lsi04g01527 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Lsi04g01527 459 Gene3D Granulin 363 426 IPR037277 -
Lsi04g01527 459 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Lsi04g01527 459 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Lsi04g01527 459 SUPERFAMILY Granulin repeat 363 397 - -
Lsi04g01527 459 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01527 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101217590 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01527 Lsi-Chr4:22877367 Lsi11g01302 Lsi-Chr11:21647277 8.62E-128 dispersed
Lsi01g00958 Lsi-Chr1:7765683 Lsi04g01527 Lsi-Chr4:22877367 2.19E-135 wgd
Lsi03g00521 Lsi-Chr3:6054071 Lsi04g01527 Lsi-Chr4:22877367 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01527 Lsi_Chr04 FPKM 0.0 0.0 0.229346 0.0 0.0 0.0 0.0 0.0 0.0 0.0