Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01528 ATGCTCCTCCTTAACAATAACATGGCTGTGGAGTTCATGGTGGGTTTTGGGGATGCTACAACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCGTCTGCTGGGATTCAAAGCGTCCAGAATTTCTTACGATTGATGTCCCATACTCCTAGTCACCAACACTCCCAAGACGATTCTTCTACTTCAACTACTCCTAATGCTATCCCTGGATACGAAGCCGTCGCCGATTCCGTCGTCACTAAATTCAAGAAGGTCATTTCTTTGCTCGACCGGAACAGAACCGGCCACGCTCGTTTCAGAAGGGCTCCGGTTCTTAATACTACTCCGCCGCCGCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTGTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCCCACAACAACCCCCATCAGCCTTCACATCCACCGAATACCTTCCAAGCCCAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCGCCCCCAATTTCCGCTGCAAATTCGTATATATCATCGCTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCCTCTTCGCTAAAGAGGAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCCTCCGGCCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCACCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGCCAAAAACCTATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCGCGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1164 49.66 MLLLNNNMAVEFMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPSHQHSQDDSSTSTTPNAIPGYEAVADSVVTKFKKVISLLDRNRTGHARFRRAPVLNTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVTRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22895393 22897608 + Lsi04G015280.1 Lsi04g01528 661577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01528 387 MobiDBLite consensus disorder prediction 131 145 - -
Lsi04g01528 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g01528 387 MobiDBLite consensus disorder prediction 59 78 - -
Lsi04g01528 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Lsi04g01528 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g01528 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g01528 387 Gene3D WRKY domain 303 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g01528 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 387 IPR044810 GO:0003700
Lsi04g01528 387 MobiDBLite consensus disorder prediction 107 145 - -
Lsi04g01528 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g01528 387 MobiDBLite consensus disorder prediction 115 130 - -
Lsi04g01528 387 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02233 Lsi-Chr2:28762750 Lsi04g01528 Lsi-Chr4:22895393 1.36E-55 dispersed
Lsi04g01528 Lsi-Chr4:22895393 Lsi10g00187 Lsi-Chr10:3136522 5.47E-14 dispersed
Lsi04g02198 Lsi-Chr4:29020887 Lsi04g01528 Lsi-Chr4:22895393 8.76E-71 transposed
Lsi01g00960 Lsi-Chr1:7792775 Lsi04g01528 Lsi-Chr4:22895393 2.57E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25209 PF03106 WRKY 4.00E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01528 - - cmo:103493562 631.328