Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01533 ATGAATAACACGAATTTCGTCTGTAATCCTATGGTTGCTCTGCCATTATTACCTTCCTCTCAGTTGCTGTTTTCGAATAACGCCATTGATTTCAGGCACAGGGTTTCCATTGTTGTAAAACCCACTTCTCAGGGTTCGCGTAGATGGCAAATCCGAGCCACCGCCGAAAATGGAGCTTCATCGGCGTCGACTTCCCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTCGTGCTTTGGGATCTTGATAACAAACCACCTCGTGGGCCGCCGTACGAGGCGGCTATGGCGCTGAAACGAGTGGCTCAACGTTTCGGACAAGTGGTTGACATGTCGGCTTACGCCAATCGCCACGCCTTTATCCACATGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGACATTCTTGAGCGCAAAGGTTTGTTCACGCCGTCCGAATCGTACGTCTGTGGGGTCTGCGGTCGCAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGCGAGCGTCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGACAGCGTTATAAGGAAAGGTTTGTATCTGGAAACCATAAGTACAATGAAGCAGCGAGGTCTCTGATTACTCCCAAAGTTGGGTATGGGTTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAAACAGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTTGTTTCCGATGATTCGGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAAGCTAATTTAGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGGGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGATGAGGAGAAGAGACGAGGAAATAGATGGAGATGATGATGGTTTTTCAGTTTCTCGTTTCTATGGAGACATTGAAGCTGGTAATGATTTGGAGAGTGTAGTGGAAGAGCTTGCTTCCTCAAGTACAGAGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGAAGAAGATGATTGGGTTGAAGAGGATGTGGCACCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGGGTATTTCTGA 1257 47.65 MNNTNFVCNPMVALPLLPSSQLLFSNNAIDFRHRVSIVVKPTSQGSRRWQIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHMPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEEDLVPKRWRMRRRDEEIDGDDDGFSVSRFYGDIEAGNDLESVVEELASSSTEFNGFRISAFSEGEDEEEDDWVEEDVAPDYLLVMSDEEDGYF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22947274 22948530 + Lsi04G015330.1 Lsi04g01533 661582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01533 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Lsi04g01533 418 Gene3D - 77 316 - -
Lsi04g01533 418 Coils Coil 180 200 - -
Lsi04g01533 418 PANTHER OS06G0166200 PROTEIN 47 390 - -
Lsi04g01533 418 CDD PIN_LabA-like 170 300 - -
Lsi04g01533 418 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Lsi04g01533 418 PANTHER - 47 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01533 Lsi-Chr4:22947274 Lsi07g01340 Lsi-Chr7:19575386 2.98E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25210 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01533 - - csv:101206044 729.554