Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01534 ATGGAAGAAGTTTGTTCCGCTGTAAATTCATCACCCAAAAGGAAGCAAAGACATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCTGTCGCTGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCGGACCAGCTTCACGACATGTCGGCTGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCCAGGGTTGACGCCATCCAGACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCAATTCCGCTACTCAAATTTCGGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCAGACGACGATTAA 459 52.07 MEEVCSAVNSSPKRKQRHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSNSATQISDKPDLNEYPNPETSDDD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22965083 22965541 + Lsi04G015340.1 Lsi04g01534 661583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01534 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 150 - -
Lsi04g01534 152 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Lsi04g01534 152 Pfam AP2 domain 28 76 IPR001471 GO:0003700|GO:0006355
Lsi04g01534 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 150 - -
Lsi04g01534 152 MobiDBLite consensus disorder prediction 118 139 - -
Lsi04g01534 152 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Lsi04g01534 152 MobiDBLite consensus disorder prediction 1 27 - -
Lsi04g01534 152 MobiDBLite consensus disorder prediction 118 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01534 Lsi-Chr4:22965083 Lsi10g00522 Lsi-Chr10:7432528 1.85E-41 dispersed
Lsi04g02382 Lsi-Chr4:30957844 Lsi04g01534 Lsi-Chr4:22965083 2.70E-26 dispersed
Lsi11g01015 Lsi-Chr11:17221551 Lsi04g01534 Lsi-Chr4:22965083 3.43E-23 dispersed
Lsi01g00965 Lsi-Chr1:7834851 Lsi04g01534 Lsi-Chr4:22965083 1.02E-54 wgd
Lsi04g01534 Lsi-Chr4:22965083 Lsi08g01490 Lsi-Chr8:23067211 5.38E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25211 PF00847 AP2 2.30E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01534 K09286 - csv:101219005 262.692