Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01535 ATGAAACCCAATCATCCTCCACTCCGACAAATCTCCAATTGCTTCATTACACCTGAAAATCTTCCCCCACAGTCAAAGCAGCCCTTCTATTTGGGCCCTTCTGATCTCGCCATGCTTTCCGTCCACTACAACCAGAAAGGCCTTCTCTTTCGCAAACCTACACAGGATGGAGATGGAGATGGAGATGGAGATCATTTTATGCTTCCCTTTCTTCATCGTCTCAAAAACTCCCTCTCCACCCTTCTCTTTCATTTCTACCCACTTTCCGGCCGCCTTGTTACCACTTCAAATGTGGTTTATGTTGACTGCGTTAACAGCCCTGGAGCCAAGTTCATCCACGCCGCCCTTGACATAACAGTCTCTGACGTTCTCTCGCCAATTCATGTGCCTCCACTCCTCCAATCTTTCTTCGACCTCAATAAAGCCGTCAACTACGATGGCCACACTATACCTTTGCTATCTATTCAGGTAACTGAATTGTTGGACGGTGTCTTCATCGCCTCTTCTTTCAACCATTCTCTTGGCGATGGAACTTCCTTTTGGAATTTCTTCAATATGTGGTCTGAGATTTTTCAAGCTCCGCCGTCTGATGGGGATGGTATTATCTCAATTTCACGGCCACCCATTCTAAAGCGGTGGTTTCCTGATGGGTGTGGTCCAATTATCAATCTCCCCTTCACCCACCCGGATCAATTTATTAACCGATTCGAAGCACCGGAGTTAAGGAAGAGATTTTTCCACTTTTCGGCAGAATCAATTGCAGATCTGAAAGCAAAAGCCAATGCAGAGTGCAACACAAAAGAAATCTCCTCCTTTCAATCATTGAGCGCACTTGTATGGCGAGGCATAACACGAGCTCGTCGCATACGGGGGGATGAAAGCACCCGTTGCATTATGTCAGCAAATTACAGAGGAAGACTAAAACCAGCGTTGGGTGAAGAATACTTAGGCAACATGATTACATCACTGAAAGCGGATGCAAAAGCAGGGGAATTGGTTGAAAGAGGGTTGGGTTGGGGTGCGTGGAAATTGCACGAAACAGTGATGAAAAACACAAACGAAAAGATAAGAGAATCACTTGAGGAGTGGATGAAGTGTCCCTATACTCATCAATTGAGTTCTTTTTCGAAGCCGTATAACATCTTGATGGGGAGCTCGCCCAGATTCAATATGTATGGGACTGAATTTGGAATGGGGAAAGCGGTGGGAGTTCGAAGTGGATATGGAAACACGTTCGATGGCAAGGTTATTGTTTATCCAGGATATGAAGGAGGAGGAAGTGTAGATTTAGAAATCTGTTTGCTCCCACAAAATATGGCAAATCTTGAATCTGATTTGGAGTTCATGAATGCTATCTCTTCTCCTCCTCACTTGGACTGTTAA 1383 45.05 MKPNHPPLRQISNCFITPENLPPQSKQPFYLGPSDLAMLSVHYNQKGLLFRKPTQDGDGDGDGDHFMLPFLHRLKNSLSTLLFHFYPLSGRLVTTSNVVYVDCVNSPGAKFIHAALDITVSDVLSPIHVPPLLQSFFDLNKAVNYDGHTIPLLSIQVTELLDGVFIASSFNHSLGDGTSFWNFFNMWSEIFQAPPSDGDGIISISRPPILKRWFPDGCGPIINLPFTHPDQFINRFEAPELRKRFFHFSAESIADLKAKANAECNTKEISSFQSLSALVWRGITRARRIRGDESTRCIMSANYRGRLKPALGEEYLGNMITSLKADAKAGELVERGLGWGAWKLHETVMKNTNEKIRESLEEWMKCPYTHQLSSFSKPYNILMGSSPRFNMYGTEFGMGKAVGVRSGYGNTFDGKVIVYPGYEGGGSVDLEICLLPQNMANLESDLEFMNAISSPPHLDC 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22975070 22976452 + Lsi04G015350.1 Lsi04g01535 661584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01535 460 Pfam Transferase family 15 449 - -
Lsi04g01535 460 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 452 - -
Lsi04g01535 460 Gene3D - 10 219 IPR023213 -
Lsi04g01535 460 Gene3D - 230 445 IPR023213 -
Lsi04g01535 460 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 8 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01535 - - - csv:101216164 719.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01535 Lsi-Chr4:22975070 Lsi04g01539 Lsi-Chr4:22998820 0 dispersed
Lsi04g01535 Lsi-Chr4:22975070 Lsi04g01536 Lsi-Chr4:22979775 1.80E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g737 Blo01g01522 . . . . Bpe04g00176 Bma04g00158 . . . Cma01g01828 . . . . . . . . . . . . . . . . . . . . Cone4ag1589 . . . Lsi04g01535 Csa04g02428 . . . . . . . . . . Sed01g2681 Cmo01g01883 . . . . . . Cpe02g00189 Bhi09g03301 Tan01g4752 Cmetu07g0986 . Hepe01g1784 Mch11g0313 . Cla05g02057 Cam05g2210 Cec05g2227 Cco05g2270 Clacu05g2203 Cmu05g2069 Cre05g2195 . . Chy07g00146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000366 2 4 2 1 1 5 0 6 6 3 4 6 3 5 5 6 6 2 2 6 6 1 6 6 7 5 9 6 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01535 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.73493 0.211255 0.402629 0.199248 0.0 0.178596