Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01539 ATGACTCCGACCACCACGAATGCCCATCATCCTTCAATTCGACGCATATCAGAATGCTTTGTCAAACCAAAATGCCTTCCTCAGGAATCAAATCGGCCCTATCATTTGATTCCTGTGGATCTCGCCATGCTCTCCGCCCATTATATCCAGAAAGGTCTCCTATTCCGCAAACCTTCCCACGCCAATCACCATCCACACCGTTTTATGGTTCCTCTTCTTCACCGCCTCAAAAACTCCCTCTCCATTGCTCTCTTTCATTTTTACCCACTTTCCGGCCGCCTTGCCACCATTACAAATGACCAACAAGCTTCCATCTCCATTTATGTTGACTGCGTCAACAGCCCTGGAGCCAAGTTCATCCATGCCGCCCTCGACATCACAATCTCCGATGTTTTGTCGCCGGTCGATGTGCCTTTAGTGGTCCAATCTTTCTTTGACCATGACAGGGCAGTCAACTACGACGGCCATACCATGCCTTTGCTTTCCATTCAGGTAACGGAGTTATTGGATGGGGTTTTTATCGCCTCTTCCTTCAACCATGCCATCGGCGACGGAACCTCCTACTGGAATTTCTTCAATATGTGGTCGGAAATTTTTCAAGCGGCACAGTCGGATGGGGATGATATTATTTTAATTTCGCGGCCGCCCATTCTGAAGCGGTGGTTTCCCGATGGGATTGGTCCAATTATCAATCTCCCCTTCACCCACCCAGATCAATTTATAAGTCGATTCGAAGCACCAGAACTCAGGGAAAGAATATTCCACTTTTCAGCAGAATCCATTGCAAAACTAAAAGCAAAAGCTAATGCAGAGTGCGACACCAAAGAAATCTCCTCCTTCCAGTCGCTATCTGCACTTGTATGGCGATCCATAACACGAGCTCGTCGCGTGCCGGAGAATCAAATTTGCAGTTGCAGTATGGCGGCGAACAATAGAGGAAGGTTAGACCCACCGTTGTCTGAAAGCTATTTTGGGAACGCGGTTACATCATTGAGAGTAGAAGCAAAAGCAGGGGAGTTGGTTGGGCGAGGGGTGGGTTGGTCAGCGTGGAAGTTGCACGAAGCTGTGGCTCACAACACAAACGAAAAGCTAAGAGAGGCACTTGATAAGTGGATGCAATCTCCCTTTACTTTTCAATTGGGTCGATTTTTTGACTCGTATAGCGTCTTGATGGGGAGCTCGCCAAGGTTCAACAAATATGGGAATGAGTTTGGAATGGGAAAAGCAGTGGCATTGCGGAGTGGATATGCCAACAAGTTCGACGGCAAGGTTTCTTCATATCCAGGATATGAAGGAGGAGGAAGTGTAGATTTAGAGATCTGTTTGCTCCCACAAAATATGGCAAATCTCGAGTCTGATTTGGAGTTCATGAATGCCATCTCCTCTCCACCTCACTTGTCCTATGAATCATATGATCTATCAAGAAAATAA 1431 46.89 MTPTTTNAHHPSIRRISECFVKPKCLPQESNRPYHLIPVDLAMLSAHYIQKGLLFRKPSHANHHPHRFMVPLLHRLKNSLSIALFHFYPLSGRLATITNDQQASISIYVDCVNSPGAKFIHAALDITISDVLSPVDVPLVVQSFFDHDRAVNYDGHTMPLLSIQVTELLDGVFIASSFNHAIGDGTSYWNFFNMWSEIFQAAQSDGDDIILISRPPILKRWFPDGIGPIINLPFTHPDQFISRFEAPELRERIFHFSAESIAKLKAKANAECDTKEISSFQSLSALVWRSITRARRVPENQICSCSMAANNRGRLDPPLSESYFGNAVTSLRVEAKAGELVGRGVGWSAWKLHEAVAHNTNEKLREALDKWMQSPFTFQLGRFFDSYSVLMGSSPRFNKYGNEFGMGKAVALRSGYANKFDGKVSSYPGYEGGGSVDLEICLLPQNMANLESDLEFMNAISSPPHLSYESYDLSRK 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22998820 23000250 + Lsi04G015390.1 Lsi04g01539 661588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01539 476 Pfam Transferase family 35 457 - -
Lsi04g01539 476 Gene3D - 15 230 IPR023213 -
Lsi04g01539 476 Gene3D - 239 453 IPR023213 -
Lsi04g01539 476 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 460 - -
Lsi04g01539 476 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 11 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01539 - - - csv:101205344 840.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01535 Lsi-Chr4:22975070 Lsi04g01539 Lsi-Chr4:22998820 0 dispersed
Lsi04g01536 Lsi-Chr4:22979775 Lsi04g01539 Lsi-Chr4:22998820 1.18E-11 dispersed
Lsi04g01539 Lsi-Chr4:22998820 Lsi04g01544 Lsi-Chr4:23010382 0 dispersed
Lsi04g01542 Lsi-Chr4:23001620 Lsi04g01539 Lsi-Chr4:22998820 4.85E-76 dispersed
Lsi04g01537 Lsi-Chr4:22991792 Lsi04g01539 Lsi-Chr4:22998820 1.07E-44 proximal
Lsi04g01538 Lsi-Chr4:22995368 Lsi04g01539 Lsi-Chr4:22998820 2.04E-33 tandem
Lsi04g01539 Lsi-Chr4:22998820 Lsi04g01540 Lsi-Chr4:23000844 2.54E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g740 . . . Bda03g00207 . . . . . . Cma01g01829 . . . . Cpe06g00169 . . . . . . . . . . . . . . . . . . . Lsi04g01539 Csa04g02427 . . . . . . . . . . . Cmo01g01885 Cmo09g00239 . . . . . . Bhi09g03302 Tan01g4754 . . Hepe01g1783 Mch11g0310 . Cla05g02055 Cam05g2209 Cec05g2225 Cco05g2268 Clacu05g2201 Cmu05g2067 Cre05g2193 . . Chy07g00145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000366 2 4 2 1 1 5 0 6 6 3 4 6 3 5 5 6 6 2 2 6 6 1 6 6 7 5 9 6 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01539 Lsi_Chr04 FPKM 19.385628 20.780081 18.439161 19.21822 17.42885 16.676741 17.88637 21.590212 22.567139 24.136227