Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01550 ATGGAAAATGATGATCTAAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTTCCTTATTCATCAACCAACCCCCTTATAATTTCCCCCAAACTACTGTTCCATTCCCGGCAACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGATCAGTAGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAAATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAAAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTTCCTGGTGGTACTAAAATGGACACTGCTTCCATGTTGGATGAAGCTATTCATTACGTTAAATTCTTAAAGACTCAAGTTCAGTCCCTTGAAAGAGCTGCCGGCGCCGGCGGGAACCGCCCAATCACTGGTGGTGGTGGTGCAGAAGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCGAATCACTCACAACCTTGA 684 46.64 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPSLFINQPPYNFPQTTVPFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAGAGGNRPITGGGGAEAPSVGFPLEMSTGSYIPNHSQP 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23061836 23062519 + Lsi04G015500.1 Lsi04g01550 661599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01550 227 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 222 - -
Lsi04g01550 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 188 IPR036638 GO:0046983
Lsi04g01550 227 Gene3D - 133 192 IPR036638 GO:0046983
Lsi04g01550 227 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Lsi04g01550 227 MobiDBLite consensus disorder prediction 31 50 - -
Lsi04g01550 227 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 222 IPR045843 GO:0003700|GO:0006355
Lsi04g01550 227 MobiDBLite consensus disorder prediction 32 50 - -
Lsi04g01550 227 MobiDBLite consensus disorder prediction 190 227 - -
Lsi04g01550 227 CDD bHLH_AtIND_like 131 187 - -
Lsi04g01550 227 SMART finulus 136 185 IPR011598 GO:0046983
Lsi04g01550 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01550 Lsi08g01480 CCT
Lsi04g01550 Lsi08g01480 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01550 Lsi-Chr4:23061836 Lsi07g00548 Lsi-Chr7:5815783 5.18E-35 dispersed
Lsi10g00560 Lsi-Chr10:8215560 Lsi04g01550 Lsi-Chr4:23061836 3.11E-45 transposed
Lsi04g01550 Lsi-Chr4:23061836 Lsi08g01480 Lsi-Chr8:22953246 1.17E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25214 PF00010 HLH 1.50E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01550 - - bhj:120087062 377.867