Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01552 ATGGGAGAAAAAAAGAAAATGCGTTCTGGTTCTAGTGTTGATTATTTGACACTGAAAACTGAGAGTGCAACTTTGTTGAACCTGTTTTTATTCACACTTTCTTTCAAATTTGTAGACGTCAGGAAGTTGGTGGATTGTCCCGCAGGCAAAGAAAACTGCTACACAAGCTTTGGAGACCGATGGATCATCGTCTCCTCCATTCTCCTCCAGAAATTCCTTCTCGCCATCGCTAATCTCCTCAAAATCTTCAAAACCATGCGAGCAAAGATTTGGGGGATATCTGAAGAAACTTACGCAGCAAAAGTGAAATGTAGAGATTGGAGAATAGAAGTGGGAAAGAAGTTAAATTTGGGGGACGATAATGAATTCATATATTATGGTGCCCTAACTATTATGGCTTCCACTTTAGCCTACCAACTTCCTTCCGTCATCCAGACTGTCGTTAATAACTGCTGGAAGGGAAAACCTACAACTCAAGCATTTACATTTCAAAACACTGCGAAAGACCCAAATGTAATAATAGTGGCATTCAGAGGCAGCTCAGAAATAGCGGATTGGTTGGTAGATCTTAATGTCTCATGGTACAATATTGAAGGCATTGGCCACATCCACGACGGTTTCATGCAAGCTCTCGGCCTTCAACAAGACACTGACTGGCCCAAGGAGCTGCCTCCCCGCCCTGACAATCACCAATTTGCCTACTACACTCTTCGCCAAGTCCTCAGAGATATTGCCAAAAACAATGATAAGGCAAGGTTCATCATCACCGGCCACAGCCTTGGCGGAGCCCTCGCCACTCTCTTTGTCACCATTCTTGCCTTCCACGACGAGTTTGCGCTTCTCAAAAAGCTGCAGGGCGTTTATACCTTTGGCCAGCCCAGAGCTGGTGACCGACATTTTGCTCAATTTATGAATAATCTTACCAAAAAATATGGCTTCCATTATTACAGATACGTTTACTCCTTTGACATGGTTCCTAGAGTTCCTTTTGATTTTAAAGATGCATGGTACAAACACTTCGGTGAATGCCTCTACTACAACTCCTGCTACAAAGGGAAGGTTTTGGAGGTTGAACCAAACAAGAATTACTTCTTTGAGATTTTGATGATACCTCGTAAGTACTTGACTGCATGGTGGGAGCTCATAAGAAGTTTAGTAATCCCACTCTTCAAGGGTCCTGATTACTTCGAGGGTTTTATTACTTTAATTGTTAGGCTGTTTGGGTTGCTTCTTCCTGGGGCATCAGCTCACTTGACTCAGAACTATATTTACTCGACTCGTTATGGAAAAATATGA 1296 42.67 MGEKKKMRSGSSVDYLTLKTESATLLNLFLFTLSFKFVDVRKLVDCPAGKENCYTSFGDRWIIVSSILLQKFLLAIANLLKIFKTMRAKIWGISEETYAAKVKCRDWRIEVGKKLNLGDDNEFIYYGALTIMASTLAYQLPSVIQTVVNNCWKGKPTTQAFTFQNTAKDPNVIIVAFRGSSEIADWLVDLNVSWYNIEGIGHIHDGFMQALGLQQDTDWPKELPPRPDNHQFAYYTLRQVLRDIAKNNDKARFIITGHSLGGALATLFVTILAFHDEFALLKKLQGVYTFGQPRAGDRHFAQFMNNLTKKYGFHYYRYVYSFDMVPRVPFDFKDAWYKHFGECLYYNSCYKGKVLEVEPNKNYFFEILMIPRKYLTAWWELIRSLVIPLFKGPDYFEGFITLIVRLFGLLLPGASAHLTQNYIYSTRYGKI 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23076972 23082083 + Lsi04G015520.1 Lsi04g01552 661601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01552 431 CDD Lipase_3 120 347 - -
Lsi04g01552 431 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 11 430 IPR044819 GO:0004806|GO:0006629
Lsi04g01552 431 Pfam Lipase (class 3) 174 331 IPR002921 GO:0006629
Lsi04g01552 431 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 11 430 - -
Lsi04g01552 431 Gene3D alpha/beta hydrolase 93 373 IPR029058 -
Lsi04g01552 431 SUPERFAMILY alpha/beta-Hydrolases 140 360 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01552 - - - csv:101203879 653.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02462 Lsi-Chr2:31121448 Lsi04g01552 Lsi-Chr4:23076972 4.80E-07 dispersed
Lsi04g01552 Lsi-Chr4:23076972 Lsi04g01556 Lsi-Chr4:23117079 2.03E-136 dispersed
Lsi04g01551 Lsi-Chr4:23070389 Lsi04g01552 Lsi-Chr4:23076972 0 tandem
Lsi04g01552 Lsi-Chr4:23076972 Lsi04g01553 Lsi-Chr4:23088279 1.12E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g755 . . . . . . . . . . Cma01g01835 Cma09g00234 . . . Cpe06g00163 . . . . . . . . . . . . . . . . Cone7ag1369 . . Lsi04g01552 Csa04g02414 . . . . . . . . . . Sed01g2671 Cmo01g01895 Cmo09g00228 . . . . . Cpe02g00184 Bhi09g03313 Tan01g4775 Cmetu07g1301 . . Mch11g0294 . Cla05g02045 Cam05g2196 Cec05g2214 Cco05g2259 Clacu05g2190 Cmu05g2056 Cre05g2185 . . Chy07g00138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011476 0 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 1 0 1 2 3 2 5 4 3 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01552 Lsi_Chr04 FPKM 1.967963 2.471776 6.075421 6.780605 9.803807 11.148031 10.304138 8.644342 7.849171 9.680395