Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01558 ATGGCGGAGGCTGCATTCTCCGTAGGATCGCGCTTCAGGACGCGTGATTCTAGTCCTGAGTCCGTCGTTTTCACTCTCGAGTCGAATTATAGCGTTTTCTCTTCTACTTCTGTTAGTGTCGAACGCTGCTCTTTCGCTTCTGATGCTCACGATTATGACTGTCGAAACTCTGACATCTCCCTGCATCTGGAAGGGAACATTGAGGAATGCAAAGAAGAAAACAGTTGTCCAGATTCTGATCCGAAGGCAATCAATCCCTCTGTGGGAAGGGAGCACAATTGCCTACCTGGAAAGAGAGAAAAAGTGAAAGTTGAAAAGGAAAATAGCTATATTGATGCAATGGATGGATGTCAACCATTGGATATGGCTAGAAACTCCTTTTCTCTCGCTCTCAAAGAATGTCGGGATCGAAGAACTAGATCCGAAGCTTTATTGAATAAGGTAGACAGGCAAAGAGCTGCTTCATTGGACCTGAATAGTGTCACTGTCTCATCTCCTCGTCTGGCAATCATGAGAAAGAGCTCTTTCTCTCCTATAACATCTGATACTAGTATGCTACAAAGTCCTGCTATGACGAGTTGTAGGCCTGCCAATGCTGAAATCCAAAAAGGTTGGAGCTCAGAAAGAGTTCCGTTACATAAAAATTATAGCTCGAAGCAAGCGACTACTGCATTCTTGCCTTTCAGTAATGGGAGAACATTGCCATCAAAGTGGGAAGATGCAGAGCGGTGGATCTTCAGTCCTGTTTTCAAAGATGGCATGGTCAGATCTGCTGTCCCTCCACCTCAAAGGCGGCCCAAGTCGAAAAGTGGCCCACTTGGATTTCCTGGTATAGCATACAATTCATCGTATTCACCAGGAATGCTGATGCTTGAGAGATCAAAGGAGGCGATTTTCGTGTCTTCACCCTTTTCGGCAGGAATGGTTGCAGCAGATGGGTTGGCAGTTCATTCAAGTGGTCATGAAGCAGTCAACCCTGTACAAAATCAGCCTTGCATAGCACGCTCAGTTAGTGTGCATGGTTGTTCTCAAACGAGGAGTGAGTCTTCATTAACTTCATCAGTTGTTGGTACAAGTTTGATTTTTTTTGGACAATATCTTCGTTATGTCATGATTGAATTGATTATTAGATTGATTGAAATATGTTTAAAAAGTCCGTCCTATTGTCCTGGAGCATCTCAAAACTCTAACGAAGTCAACAAATCAGTCACCAATATATCTCGTGATGTTTCAAGAAGGGACATGGCGACCCAAATGAGCCCAGATGATGACTTTAAATCATCTTTGGAGATTAGACCACCTATCTCTATTGCCACTTCTTCAGTCCAACCCACTAGGAAGCTAAAGAGCTTGTCTTGCTCAAAATCGGAAGTCAAGGATGTTGAGGTTGATGGACGCGTTACCTTGACTAGGTGGTCTAAGAAACACAAATCCCGGATTCCATGCAAGGTTCAAGTTCGTGATAAGGGTGCAGAGCCTGTGATCTGTGCTTGGGATGTATCAGACACAACAAGGAGCATCTCAAAAGTCATGAGAGAGGAGGCAAAGATTACAGCATGGGAGAATCTTCAGAAGGCAAAAGCTGAGGCTGCTATTAGGAAGTTAGAGATGAAGCTGGAGAAGAAGAGATCATCATCCATGGATAAGATCGTAAAAAAGTTGAAATCTGCTCAGAAGAAAGCTCAAGAAATGAGGAACTTCGTGCTAGCTAATCAGATGAGCCAAGTTGACGGGTCTTCTCAAAGAGTAGTATCTTCTGGCAGAAGCCCTCAGAGGACTTCATTAAGCAGTTGTTTCACTTGCCACGCTTTCTGA 1815 43.91 MAEAAFSVGSRFRTRDSSPESVVFTLESNYSVFSSTSVSVERCSFASDAHDYDCRNSDISLHLEGNIEECKEENSCPDSDPKAINPSVGREHNCLPGKREKVKVEKENSYIDAMDGCQPLDMARNSFSLALKECRDRRTRSEALLNKVDRQRAASLDLNSVTVSSPRLAIMRKSSFSPITSDTSMLQSPAMTSCRPANAEIQKGWSSERVPLHKNYSSKQATTAFLPFSNGRTLPSKWEDAERWIFSPVFKDGMVRSAVPPPQRRPKSKSGPLGFPGIAYNSSYSPGMLMLERSKEAIFVSSPFSAGMVAADGLAVHSSGHEAVNPVQNQPCIARSVSVHGCSQTRSESSLTSSVVGTSLIFFGQYLRYVMIELIIRLIEICLKSPSYCPGASQNSNEVNKSVTNISRDVSRRDMATQMSPDDDFKSSLEIRPPISIATSSVQPTRKLKSLSCSKSEVKDVEVDGRVTLTRWSKKHKSRIPCKVQVRDKGAEPVICAWDVSDTTRSISKVMREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIVKKLKSAQKKAQEMRNFVLANQMSQVDGSSQRVVSSGRSPQRTSLSSCFTCHAF 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23131941 23136188 - Lsi04G015580.1 Lsi04g01558 661607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01558 604 PANTHER REMORIN FAMILY PROTEIN 81 602 - -
Lsi04g01558 604 PANTHER OS02G0116800 PROTEIN 81 602 - -
Lsi04g01558 604 Coils Coil 525 545 - -
Lsi04g01558 604 Pfam Remorin, C-terminal region 492 581 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01558 - - - csv:101215278 945.266
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01558 Lsi08g01479 CCT
Lsi04g01558 Lsi08g01479 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01558 Lsi-Chr4:23131941 Lsi05g00003 Lsi-Chr5:47691 3.60E-06 dispersed
Lsi01g00117 Lsi-Chr1:1233076 Lsi04g01558 Lsi-Chr4:23131941 4.71E-09 transposed
Lsi07g00644 Lsi-Chr7:6867727 Lsi04g01558 Lsi-Chr4:23131941 6.94E-13 transposed
Lsi08g01607 Lsi-Chr8:24027719 Lsi04g01558 Lsi-Chr4:23131941 1.11E-08 transposed
Lsi11g00027 Lsi-Chr11:290992 Lsi04g01558 Lsi-Chr4:23131941 1.28E-12 transposed
Lsi01g00975 Lsi-Chr1:7971455 Lsi04g01558 Lsi-Chr4:23131941 8.30E-67 wgd
Lsi04g01558 Lsi-Chr4:23131941 Lsi08g01479 Lsi-Chr8:22939102 2.89E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013827 0 2 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 3 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01558 Lsi_Chr04 FPKM 2.262125 2.372701 9.700543 10.999912 6.733924 5.612976 7.264357 21.017246 20.602882 25.525927