Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01559 ATGGGATCTGGCAACGAAGATTCCGAAGACGAAGCCGGAGTCTCTGCCATTAGGGCTCTCGGCTCTCTCTTTAAGTTGACCGAAGTCTTTCTCTGGGACGATGAGACAGAATTAACTAGACGAGTGGAAAGTACTGGTCAGTTGGATTTTTTTTGGCCAGGTATCAGCTTATTACCGGAGGATATCGAACTTACTGAACAGATGAATGCTTTGGGGCTTCCTCTTTCGTTCCACACAAACAAAGAGCAGAAGAGAATTGGAATCACTATGGGTAAAAGAAAAGCAACTGTCAAGCATTTTAGAACCCAGGAAGGACTTCTAGACAAAGAATTGGAGCTTCCCAATGCCAGCAGCAGGGGGGAGATTGAAGCTAACATTAATTTCAATGATGATGCTATAGGTTCTCTATCATACTCGTCTATGGTGAACCAAAGTGAGACATCTGATCATGATGTTGTGTTGGATGCCAATGAATCCCATGTCATCTTTGATCAAAATATTTCACCTAATTCAAGTGGACCTATAAGTGGTGCTGTTGAAGAACAATCTTGCGATGTTATGTGCAATTTTGTGCTAAATAATGGGGGAGACCATGAATTAAGCTTAGGTGATGCTGTGCTGGGGGATCATAGTCATACAAAAGTTAGATTGAGTTCAATTGGTTTAGATAAAGTTCATTCTTCAAGAATGTGTATGACAGGTCTTGACGTCAGCGATAGCAAGCAGGAGGAAGCTGAACCACCTATGGAGTCAGAAGGTTCGTCCACAACTTTACAAGATACTGAAGTGCAGATGACCAACATTGATAGTGCCATTGGACTGCCAGTAGTAGCTGAATCATCTTTCCTTCATACAGAAGCGGACTATAATGAAGATGACCATGTTGTTGGATGTCCTCATGGATCTGGAGAATGGATGGTGTATTGGGATTCTTTTTATATGAGAAACTACTTCTATAATATGAAGACACATGAGTCTACTTGGAATCCTCCTCCAGGGTTGGAACATTTTGCACTTTCTGATGCCAATTTCACAGAAAATAAACCAATTTCTGAAGTTGTTGAAATGGATGTATTAGAAGACGTAAAATCAGAAGATATTTGTAGTGTGCTTGGTGAAACCAGGTCATGTATGAATTTACTTGGTGATAATGTGCATTGTCAACCACCTGATGCACTGTTGGAGGGCTCTGAGAGTAGTGCATCTGTCAATACTTCAGTTAACAGTTATAAGCAATCTGACGAACCTCAAGAGTGGCAGATGAGTTGTAAAAATATTGGGGAAAATATCAGATGCAGTTGTGAAGGTCATGTCAAACAACTATGTCATGATAACTGCAGCAATGGTTTCCAGCTCATTGTTGCAAATGGAGCTTCTGAACAAAAGTCCTTTGTCCATCGCAAACCTAGTAACATGGACTCACCTGAGATAGGTTGTGTCACCACAGATGATGATGAAGATGCAGTGGGTTTAGCTACTAACAGTGCTTCTCATATGCTTCAGCAGGCAGATCATATGGATGGTGATATGCATTTTGGAAATGGACCTACCATATGTACACTGGACAAATTTTCTTCTGCAGAATTTCATTCTCCCACAATCACTGAAGAGTATCCCACAAGTATTACTAAGTATTGGTGTCAGAGGTATCGACTTTTCTCCAGATTTGATGATGGTGTAAAAATGGACAAAGAAGGATGGTTTTCTGTAACTCCAGAGCCTATAGCTAGGCATCACGCATCACGTTGTGGTAGCAATATGATAATTGACTCTTTCACTGGTGTTGGTGGAAATGCCATCCAGTTTTCCCAAAGGGCCAAACATGTTATCGCAATTGATATTGATCCAACAAAGATTAGATATGCCCAACATAATGCAGCCATATATGGTGTTGAAGATCAAATAGATTTCATAAAGGGGGACTTCTTCCGTTTGGCCCCACATCTGAAGGCCGACGTTATATTCTTATCACCTCCTTGGGGAGGCCCGGATTATGCCAGAGTAGATATTTATGACCTACAGACCATGCTCAAACCACATGATGGGTATTTTCTCTTCAACATTGCTAAGAAAATTGCTCCCGTCGTTGTCATGTTTCTTCCAAAGAATGTTAATCTTGACCAACTAGCGGAGCTGTCTCTTTCTTCAGATCCTCCGTGGTCACTTGAGGTTTTGCTTTCCATTGTGCAATGTGCAATGTGCAATTTGAAGTCTGCAGGTAGAGCAGTAGTTTCTACTGCAAGTTGA 2247 41.26 MGSGNEDSEDEAGVSAIRALGSLFKLTEVFLWDDETELTRRVESTGQLDFFWPGISLLPEDIELTEQMNALGLPLSFHTNKEQKRIGITMGKRKATVKHFRTQEGLLDKELELPNASSRGEIEANINFNDDAIGSLSYSSMVNQSETSDHDVVLDANESHVIFDQNISPNSSGPISGAVEEQSCDVMCNFVLNNGGDHELSLGDAVLGDHSHTKVRLSSIGLDKVHSSRMCMTGLDVSDSKQEEAEPPMESEGSSTTLQDTEVQMTNIDSAIGLPVVAESSFLHTEADYNEDDHVVGCPHGSGEWMVYWDSFYMRNYFYNMKTHESTWNPPPGLEHFALSDANFTENKPISEVVEMDVLEDVKSEDICSVLGETRSCMNLLGDNVHCQPPDALLEGSESSASVNTSVNSYKQSDEPQEWQMSCKNIGENIRCSCEGHVKQLCHDNCSNGFQLIVANGASEQKSFVHRKPSNMDSPEIGCVTTDDDEDAVGLATNSASHMLQQADHMDGDMHFGNGPTICTLDKFSSAEFHSPTITEEYPTSITKYWCQRYRLFSRFDDGVKMDKEGWFSVTPEPIARHHASRCGSNMIIDSFTGVGGNAIQFSQRAKHVIAIDIDPTKIRYAQHNAAIYGVEDQIDFIKGDFFRLAPHLKADVIFLSPPWGGPDYARVDIYDLQTMLKPHDGYFLFNIAKKIAPVVVMFLPKNVNLDQLAELSLSSDPPWSLEVLLSIVQCAMCNLKSAGRAVVSTAS 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23142648 23148082 - Lsi04G015590.1 Lsi04g01559 661608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01559 748 Pfam RNA cap guanine-N2 methyltransferase 586 713 IPR019012 GO:0001510|GO:0008168|GO:0009452
Lsi04g01559 748 Gene3D Vaccinia Virus protein VP39 535 739 IPR029063 -
Lsi04g01559 748 CDD AdoMet_MTases 588 686 - -
Lsi04g01559 748 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 548 746 IPR029063 -
Lsi04g01559 748 CDD WW 305 333 IPR001202 GO:0005515
Lsi04g01559 748 Gene3D - 291 349 - -
Lsi04g01559 748 SUPERFAMILY WW domain 297 332 IPR036020 GO:0005515
Lsi04g01559 748 ProSiteProfiles WW/rsp5/WWP domain profile. 305 333 IPR001202 GO:0005515
Lsi04g01559 748 MobiDBLite consensus disorder prediction 237 257 - -
Lsi04g01559 748 PANTHER S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED 523 724 - -
Lsi04g01559 748 ProSitePatterns WW/rsp5/WWP domain signature. 305 331 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01559 K14292 TGS1; trimethylguanosine synthase [EC:2.1.1.-] - csv:101215034 1117.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g757 Blo01g01527 . Bda01g00568 . Bpe02g00429 . . . . . . Cma09g00232 . . . Cpe06g00162 . . . . . . . . . . . . . . . . Cone7ag1371 . . Lsi04g01559 Csa04g02411 . . . . . . . . . . . . Cmo09g00224 . . . Car09g00201 . . Bhi09g03317 Tan01g4781 . . . . . Cla05g02043 Cam05g2193 Cec05g2211 Cco05g2256 Clacu05g2187 Cmu05g2053 Cre05g2182 . . Chy07g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003746 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01559 Lsi_Chr04 FPKM 1.511835 2.026908 2.504499 2.663539 1.684771 1.374531 1.539764 4.568561 4.189412 4.650971